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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0040s0010.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 171aa MW: 18995.9 Da PI: 4.5419 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.7e-16 | 2 | 42 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T++E+ l +++++++G++ W++Iar+++ gRt++++k++w+++ SapurV1A.0040s0010.3.p 2 TPQEERLVLELHARWGNR-WSRIARKLP-GRTDNEIKNYWRTH 42 9*****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 9.7E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.61E-12 | 1 | 42 | No hit | No description |
PROSITE profile | PS51294 | 23.49 | 1 | 47 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.69E-12 | 2 | 47 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-14 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-19 | 2 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MTPQEERLVL ELHARWGNRW SRIARKLPGR TDNEIKNYWR THTRKKAQER KTAMSPSLSS 60 SNCSSSSNIT TVNSPPLPGT GEASFYDTGE LGEAVQGGEK GYSMDDIWKD IENTINEPVC 120 DGFSEEGCNF SCPSLASPSW EYSPDTLWSI SGEESRMFLP YDDGTMLLTG * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0040s0010.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464921.1 | 8e-98 | transcription factor MYB48 isoform X1 | ||||
Swissprot | Q9LX82 | 8e-49 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A2K1Z1S7 | 2e-96 | A0A2K1Z1S7_POPTR; MYB family protein | ||||
STRING | POPTR_0009s03240.1 | 3e-96 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 2e-49 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0040s0010.3.p |
Publications ? help Back to Top | |||
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