PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0040s0010.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 214aa MW: 23857.6 Da PI: 6.7555 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.3e-17 | 41 | 85 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w+++ SapurV1A.0040s0010.2.p 41 RGKMTPQEERLVLELHARWGNR-WSRIARKLP-GRTDNEIKNYWRTH 85 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.762 | 1 | 35 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.46E-21 | 21 | 91 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.6E-10 | 21 | 47 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.532 | 36 | 90 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-16 | 40 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-16 | 41 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-12 | 43 | 85 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-20 | 48 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MGFCSESIRF EGGGRQIIGL NRTGKSCRLR WVNYLHPGLK RGKMTPQEER LVLELHARWG 60 NRWSRIARKL PGRTDNEIKN YWRTHTRKKA QERKTAMSPS LSSSNCSSSS NITTVNSPPL 120 PGTGEASFYD TGELGEAVQG GEKGYSMDDI WKDIENTINE PVCDGFSEEG CNFSCPSLAS 180 PSWEYSPDTL WSISGEESRM FLPYDDGTML LTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-18 | 22 | 90 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-17 | 22 | 90 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-17 | 22 | 90 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 1e-17 | 22 | 90 | 60 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 7e-18 | 22 | 90 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-18 | 22 | 90 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0040s0010.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453164.1 | 1e-117 | transcription factor MYB48 isoform X1 | ||||
Swissprot | Q9LX82 | 9e-70 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A3N7FD39 | 1e-116 | A0A3N7FD39_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s03240.1 | 1e-116 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.4 | 7e-79 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0040s0010.2.p |
Publications ? help Back to Top | |||
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