PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0040s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 236aa    MW: 26685.9 Da    PI: 6.7683
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0040s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-171057148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT++Ed ll++ v+++G ++W+ +a+  g++Rt+k+c++rw +yl
  SapurV1A.0040s0010.1.p 10 KGPWTEQEDILLINFVNLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYL 57
                            79********************************************97 PP
2Myb_DNA-binding53.65.1e-1763107147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w+++
  SapurV1A.0040s0010.1.p  63 RGKMTPQEERLVLELHARWGNR-WSRIARKLP-GRTDNEIKNYWRTH 107
                             89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.984557IPR017930Myb domain
SuperFamilySSF466891.91E-299104IPR009057Homeodomain-like
SMARTSM007171.3E-15959IPR001005SANT/Myb domain
PfamPF002493.8E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-211164IPR009057Homeodomain-like
CDDcd001671.67E-111257No hitNo description
PROSITE profilePS5129425.53258112IPR017930Myb domain
SMARTSM007176.8E-1662110IPR001005SANT/Myb domain
PfamPF002491.2E-1563107IPR001005SANT/Myb domain
CDDcd001675.97E-1265107No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2365111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MKTMKDETRK GPWTEQEDIL LINFVNLFGD RRWDFVAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRGKMTPQE ERLVLELHAR WGNRWSRIAR KLPGRTDNEI KNYWRTHTRK KAQERKTAMS  120
PSLSSSNCSS SSNITTVNSP PLPGTGEASF YDTGELGEAV QGGEKGYSMD DIWKDIENTI  180
NEPVCDGFSE EGCNFSCPSL ASPSWEYSPD TLWSISGEES RMFLPYDDGT MLLTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2771121105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-27111249159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-27111249159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0040s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313452.21e-147transcription factor MYB48 isoform X2
SwissprotQ9LX824e-94MYB48_ARATH; Transcription factor MYB48
TrEMBLB9HPK91e-146B9HPK9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03240.11e-147(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.13e-93myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]