PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0039s0400.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 314aa    MW: 34912.2 Da    PI: 7.0067
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0039s0400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13101152155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +r++h  +Er+RR+++N+ ++ +r++lP++   + ++ + a+i+  A++++k+L+
  SapurV1A.0039s0400.1.p 101 QRMTHINVERNRRKQMNEYLAAIRSMLPPS---YVQRADQASIVGGAINFVKELE 152
                             79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-15100169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-12100156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.792100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.98E-12100156No hitNo description
PfamPF000103.1E-10101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-9106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MALETVVFQQ DPYSTLGVGA AWIHGFDLEG EKANYHETLD TTISIESDFH SNSNWNISNS  60
SSQEINCAWN GGLVTGGNAA GGRRKRRRRR SIKDEAEVAH QRMTHINVER NRRKQMNEYL  120
AAIRSMLPPS YVQRADQASI VGGAINFVKE LEKLIQSLES HKQIKKVKSA TGSDFSSPFS  180
DFFTFPQYST ASSRNEHSNN SSSSTESVFA DQKRSIIIAD VEVTMIESHA NLKIQSRKHP  240
KQLSKMVAGL HSLALHILHL NVTTIDQMVL YSFSVKVEDE CKLTSVDDIA AAVHEMVVRI  300
QEDVTSNCMP GIE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18289RRKRRRRR
28387RKRRR
38389RKRRRRR
48390RKRRRRRS
58489KRRRRR
6101112RMTHINVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0039s0400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164471e-121AC216447.1 Populus trichocarpa clone ACSB1045-A16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022837.10.0PREDICTED: transcription factor bHLH96-like isoform X1
TrEMBLB9H4P91e-152B9H4P9_POPTR; Uncharacterized protein
STRINGPOPTR_0007s04950.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-59bHLH family protein