PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0039s0340.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 338aa    MW: 37868.6 Da    PI: 4.5074
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0039s0340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.6e-1960113356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  SapurV1A.0039s0340.1.p  60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113
                             566899***********************************************9 PP
2HD-ZIP_I/II130.75.7e-4259151193
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l+++ ++L++++e+L
  SapurV1A.0039s0340.1.p  59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYSVLKANYDSLEHNFDALQHDNETL 145
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reelke 93 
                              +e++e
  SapurV1A.0039s0340.1.p 146 LKEIRE 151
                             999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.35E-1947117IPR009057Homeodomain-like
PROSITE profilePS5007117.44355115IPR001356Homeobox domain
SMARTSM003891.0E-1758119IPR001356Homeobox domain
CDDcd000868.04E-1760116No hitNo description
PfamPF000464.9E-1660113IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.4E-2062122IPR009057Homeodomain-like
PRINTSPR000319.9E-68695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000319.9E-695111IPR000047Helix-turn-helix motif
PfamPF021831.3E-17115156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MKRSLGSSDS LGALMSICPT TEEHSPRNHA HVYSREFQSM LDGLDEEGCV EEAGGHVTEK  60
KRRLSVDQVK ALEKNFEVEN KLEPERKVKL AQELGLQPRQ VAVWFQNRRA RWKTKQLERD  120
YSVLKANYDS LEHNFDALQH DNETLLKEIR ELKAKLNEDN VNSNVSVKEE IILAESEDKV  180
AEEETPALLD SVAASETKEM NYETFNNHSS INIGLGASLF PDFKDGSSDS DSSAILNNED  240
NSPNPAISSS GILQSQLMVS PPPSSSLKFN CSASSSSPSS MTCFQFSKSY QAQFVKLEEH  300
NFFSSEEACN FFSDEQPPTL PWYSSDQWNQ ETGTNNY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0039s0340.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1479450.0EF147945.1 Populus trichocarpa clone WS0126_C14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380403.10.0homeobox-leucine zipper protein ATHB-6
TrEMBLA9PHT90.0A9PHT9_POPTR; HD-ZIP family protein
STRINGPOPTR_0007s05010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.12e-81homeobox protein 6