PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0038s0220.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 487aa    MW: 53804.6 Da    PI: 8.318
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0038s0220.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.5e-17168217155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  SapurV1A.0038s0220.4.p 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 217
                             78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-15168226IPR016177DNA-binding domain
PfamPF008477.3E-9168217IPR001471AP2/ERF domain
CDDcd000185.27E-24169227No hitNo description
PROSITE profilePS5103217.583169225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-17169225IPR001471AP2/ERF domain
SMARTSM003808.9E-33169231IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-6260304IPR016177DNA-binding domain
CDDcd000183.00E-13260305No hitNo description
SMARTSM003805.7E-12261309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MLDLNLGITH SDSSCDDNNK NNMMFFVDVE NHYHQEEAAA SRTHQMEDSA TSNSSVINNT  60
EDENSSNNSN SAFIFDILKK DENFTSTTTT DASKQTNSNC DFTTQQLSPQ RSGLKLNLQP  120
GLGATTDTRP QWLKLSQMGP GGESELKIVQ QKQQQARKSR RGPRSRSSQY RGVTFYRRTG  180
RWESHIWDCG KQVYLGGFDT AHTAARAYDR AAIKFRGVDA DINFTLSDYE EDMKQMKNLN  240
KEEFVHILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKAYDKAA LKCNGREAVT  300
NFEPSVYKGE IVFDTNHGGS GHNLELSLGI SQPSNDSKGN DNLGDGHCCY GGCEMPIKER  360
QVAGGTAAAH MGLDTLRGLP VVSKNLLTWS GMHPGLASSY EATTEKRFEA VSSPRFSSWP  420
WQINGSNNVV ATMPQLCVAA SSGFSSSTKT VPPASLPFNQ QNHFANNLRL TSFTTSATNP  480
FYSYIS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0038s0220.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463450.10.0ethylene-responsive transcription factor RAP2-7 isoform X3
SwissprotQ9SK032e-94RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2K1ZBR60.0A0A2K1ZBR6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04490.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.15e-87related to AP2.7