PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0037s0530.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 438aa    MW: 48516.2 Da    PI: 5.7361
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0037s0530.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.6e-10245292455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  SapurV1A.0037s0530.1.p 245 SHSLAERVRREKISERMKYLQDLVPGC----DKITGKAGMLDEIINYVQSLQ 292
                             8*************************9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.11E-16239309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-10239296No hitNo description
PROSITE profilePS5088815.637241291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-17241307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-7245292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-9247297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MINRALLPAG GGENMLHCTD MTVLERQRAR IKWQQEQQQQ FQLQQQEISY FTELAEVFHQ  60
AGFHEGSLSE VVTRSVKPDP GLVDNGWNND HVVGYGVGLP YNNGLGFELN YGAISRTSSC  120
PPEAVAAVAE ATVKGSESVV SDMISSGAGR ESSKKRKVDK IQNNSKVVAE EDTRDKRIKG  180
CAEQGESKIT EKNNNKNSRN NNTNKNNNSN KENSDETSKD NSKVSEVQKP DYIHVRARRG  240
QATDSHSLAE RVRREKISER MKYLQDLVPG CDKITGKAGM LDEIINYVQS LQRQVEFLSM  300
KLAAANPRLD FNVDNLFAKE AFPACSINFP TIGMSSDMTN PAYLQFNPAQ QQLVACCGLD  360
MGIDPPDMAL KRTTSAPVSI PETFLDSSCF TQTHPPPTWD ADLQNLYNVA FDQGRQTSFQ  420
TQPFTGSIEA SNLKMEM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0037s0530.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1466663e-87EF146666.1 Populus trichocarpa clone WS01211_J16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313791.10.0transcription factor bHLH63 isoform X2
TrEMBLB9HRM40.0B9HRM4_POPTR; Uncharacterized protein
STRINGPOPTR_0009s12000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-65cryptochrome-interacting basic-helix-loop-helix 1