PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0037s0280.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C3H | ||||||||
Protein Properties | Length: 730aa MW: 79318.4 Da PI: 6.5944 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.4e-07 | 306 | 326 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg SapurV1A.0037s0280.1.p 306 PCPDFRK-GACRRGDMCEYAHG 326 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 3.11E-15 | 39 | 166 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 5.0E-9 | 83 | 156 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.94E-14 | 86 | 165 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.2E-16 | 86 | 167 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.255 | 87 | 180 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.011 | 87 | 117 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 8.4E-4 | 122 | 154 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.14 | 122 | 157 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 301 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 306 | 328 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-4 | 306 | 328 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-5 | 306 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 334 | 364 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 33 | 336 | 359 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 730 aa Download sequence Send to blast |
MCCRLERLKL AAIPTPPTSS FEKTRPSNID MNHLTIKTED AFVNLLELAA NNDVEGIKKS 60 IEHDLSCADE IGLWYGRQKG SKQMVNDHRT PLMVAATYGS VDVLKVILSV SDVDVNRSCG 120 LDKSTALHCA ASGGAVNAVD VVKLLLAAGA DCTLVDANGH LPIDVITVPP KLQDARLILE 180 ELLAADGSLV EHNLRVSIAT SNSNSPPLSP SQENGSPLSG SDSPLKSKLY EAPVSFVSEK 240 KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF 300 HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTNCAR RVCFFAHTVE 360 ELRPLYVSTG SAVPSPRSGT SAAAAMDFAA AMNLLPGSPS AASIMSPSPF TPPMSPSGNG 420 MPHSSLAWPQ PNVPALHLPG CNMQSSRLRS SLNARDIPAD YSLLPEFDVQ QQHLLSELSS 480 LSQPSLSNNS LNRSGRLKAL TPSNLDDFFS AESSSPRYAD QALASAVFSP THKSAVLNQF 540 QPQQSMLSPI NTNFSPKNVD HPLLQASFAS GRMSPRSVEP ISPMSSRSSV LAQREKLQQL 600 RSLSSRELGS NAAAIVGSPV NIWSKWGSSN GKPDWTVSTD ELGKLRRSNS FELGNGDDPD 660 LSWVQSLVKE SPTEMKEKLR MPISGSVAAT ASSSESSNMN SQIEPIDIDH VVESWVEQLQ 720 IDQLVAQQN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0037s0280.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323312.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | B9II60 | 0.0 | B9II60_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s05410.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0037s0280.1.p |
Publications ? help Back to Top | |||
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