PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0036s1170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 302aa    MW: 32767.1 Da    PI: 7.6485
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0036s1170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.11.8e-16225261135
                    GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  SapurV1A.0036s1170.1.p 225 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 261
                             *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.6E-1078113IPR010399Tify domain
PROSITE profilePS5132013.76478113IPR010399Tify domain
PfamPF062003.2E-1081112IPR010399Tify domain
PfamPF062036.4E-16149191IPR010402CCT domain
PROSITE profilePS5101713.205149191IPR010402CCT domain
PROSITE profilePS501148.814219267IPR000679Zinc finger, GATA-type
SMARTSM004013.3E-13219278IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-12220271No hitNo description
Gene3DG3DSA:3.30.50.101.1E-15224266IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.61E-14224267No hitNo description
PROSITE patternPS003440225252IPR000679Zinc finger, GATA-type
PfamPF003202.0E-14225261IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDGTNGSNNS ARMQMSSEAQ NPSMQMHYDL HQSNQNGMQM TSDGNGMIME NGDNDHNGVV  60
NGDDDHGGTM MAVSDNHEIE NADQLTLTFQ GQVYVFDSIS PGKVQAVLLL LGGREVPAAS  120
TPAAPLTAHH NSNNRGLFGT PQRFSVPQRL ASLIRFREKR KERNFDKKIR YTVRKEVALR  180
MQRNKGQFTS SKPNHDDSAS AATSWGSNES GCSDSNGSQH QEAVCRHCGI SEKSTPMMRR  240
GPEGPRTLCN ACGLMWANKG TLRDLSKATP HTGPSSSSMN SSAMNGNTDG SQRVAWNNDF  300
S*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0036s1170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316441.20.0GATA transcription factor 28
SwissprotQ8H1G01e-106GAT28_ARATH; GATA transcription factor 28
TrEMBLB9HV291e-180B9HV29_POPTR; Uncharacterized protein
STRINGPOPTR_0010s25810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-101ZIM-LIKE 2