PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0035s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 270aa    MW: 29694.7 Da    PI: 9.2322
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0035s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WTt Ed ll+++++ +G g+W++ +++ g+ R++k+c++rw++yl
  SapurV1A.0035s0040.1.p 14 RGPWTTKEDTLLINYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWLNYL 61
                            89******************************99************97 PP
2Myb_DNA-binding51.62.2e-1667111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+ +
  SapurV1A.0035s0040.1.p  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNCH 111
                             7999******************.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.852961IPR017930Myb domain
SuperFamilySSF466895.5E-3011108IPR009057Homeodomain-like
SMARTSM007175.7E-121363IPR001005SANT/Myb domain
PfamPF002495.3E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-231568IPR009057Homeodomain-like
CDDcd001675.77E-101661No hitNo description
PROSITE profilePS5129425.41662116IPR017930Myb domain
SMARTSM007174.5E-1666114IPR001005SANT/Myb domain
PfamPF002491.7E-1467109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2569116IPR009057Homeodomain-like
CDDcd001673.61E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRAPCCSKV GLYRGPWTTK EDTLLINYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWLNY  60
LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNC HLSKRLMKNS  120
TEGNKSPCMG GSAGKGSGTK ASNKRKQKED SDGISSQNGE AAAKIKIYLP KATKVCPSSV  180
TKYIQSMIRS SPRKVEDGDH TMSGLKTANN GGQGWGSNNE ELDGLVCDLD SSSPNSVQNH  240
IMLDDIFEEY QQLLKADGIV DSFVDSLLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26121165108B-MYB
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0035s0040.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026986.11e-155PREDICTED: myb-related protein P-like
SwissprotQ9LNC95e-62MYB13_ARATH; Transcription factor MYB13
TrEMBLB9GL111e-149B9GL11_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11100.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.14e-64myb domain protein 111
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]