PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0033s0490.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 570aa    MW: 63568.2 Da    PI: 5.549
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0033s0490.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.41.2e-962145674373
                    GRAS   4 lLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                              + ++Ae +++g+  laq +Larl+++ + p g+p qR+a+yf+eAL+  l+       +  ++      n + ++ a+k fse+sP
  SapurV1A.0033s0490.5.p 214 PICQAAELIETGNPVLAQGILARLNHQlSVPIGKPYQRAAFYFKEALQLLLNM------NNNNSIGI-ACNLIFKIGAYKSFSEISP 293
                             5789*********************9989999******************998......22222222.35699************** PP

                    GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                             il+f ++t+Nqa+lea+eg er+H++Dfdi++G+QW++L+q+La R++g+psl+iT+++sp+s+++ el  t+e+L+ fA+e+++pf
  SapurV1A.0033s0490.5.p 294 ILQFENFTCNQALLEAFEGFERIHVVDFDIGYGGQWASLMQELALRNGGAPSLKITAFASPSSQDELELGFTQENLKIFASEVNMPF 380
                             *************************************************************************************** PP

                    GRAS 177 efnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                             e ++l  ++l++   + +Lrv ++E++aVnl +  ++ +      +s+ + vL++vk+lsPkvvv  ++ + +++ +F++++ +a++
  SapurV1A.0033s0490.5.p 381 ELEILSLESLSSGsWPMHLRVTEKEVIAVNLPVGSFSNY------PSTLPLVLRFVKQLSPKVVVSLDRGCYRSDLPFAHHVNHAIQ 461
                             ****97777776625788***************888877......445567************************************ PP

                    GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                              y++l++sl+a    + ++ +k+Er+l+++ i++ v  ++ +        + Wr+ + ++GF+p+++s+++++qa++l+++++++g+
  SapurV1A.0033s0490.5.p 462 SYTSLLESLDAV-NVNLDALQKIERFLVRPGIEKSVLGRHCS----LYMTAPWRSLFLQSGFTPLTFSNFTESQAEYLVQRTPVRGF 543
                             *********665.3566999*****************99998....77789************************************ PP

                    GRAS 350 rveeesgslvlgWkdrpLvsvSaW 373
                             +ve+++ slvl+W+++ Lvs+SaW
  SapurV1A.0033s0490.5.p 544 HVEKRQSSLVLCWQQKDLVSASAW 567
                             ************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.834185548IPR005202Transcription factor GRAS
PfamPF035144.2E-94214567IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MEDWESGLDG SPSQEQSILR LIMGDVEDPF LGLNKLLQSG SRSQDMELSA SGFGVVDQVF  60
GFEVPNMSTA SASLLVNHNS TDPSSIHGLF QQHQQHVAFD QDEKPRILNP GAIINQNQHQ  120
FVQNPAMLYA QLEEHHNNLH FLSPPPLKRL DTGPAGANHV PKVFDLRLPE SFPPRQQQQF  180
QLMQQQRQGM IAKQEVAGDE LETQQQLQQA IINPICQAAE LIETGNPVLA QGILARLNHQ  240
LSVPIGKPYQ RAAFYFKEAL QLLLNMNNNN SIGIACNLIF KIGAYKSFSE ISPILQFENF  300
TCNQALLEAF EGFERIHVVD FDIGYGGQWA SLMQELALRN GGAPSLKITA FASPSSQDEL  360
ELGFTQENLK IFASEVNMPF ELEILSLESL SSGSWPMHLR VTEKEVIAVN LPVGSFSNYP  420
STLPLVLRFV KQLSPKVVVS LDRGCYRSDL PFAHHVNHAI QSYTSLLESL DAVNVNLDAL  480
QKIERFLVRP GIEKSVLGRH CSLYMTAPWR SLFLQSGFTP LTFSNFTESQ AEYLVQRTPV  540
RGFHVEKRQS SLVLCWQQKD LVSASAWGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3121756725378Protein SCARECROW
5b3h_A4e-3121756724377Protein SCARECROW
5b3h_D4e-3121756724377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0033s0490.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2118040.0AC211804.1 Populus trichocarpa clone POP017-B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451816.10.0scarecrow-like protein 6 isoform X2
SwissprotO813161e-162SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2K2BIU30.0A0A2K2BIU3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-161GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]