PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0033s0460.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 688aa    MW: 75916.9 Da    PI: 5.5793
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0033s0460.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.48e-953316835373
                    GRAS   5 LlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                             + ++Ae +++g+  laq +Larl+++ + p  +p qR a+yf+eAL+  l+       +  ++  t+ +n + ++ a+k fse+sPi
  SapurV1A.0033s0460.1.p 331 VCQAAELIETGNPVLAQGILARLNHQlSVPISKPYQRTAFYFKEALQLLLNV------NNNNCIGTA-YNLIFKIGAYKSFSEISPI 410
                             789*********************99677888******************98......566666665.89***************** PP

                    GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                             l+f+++t+Nqa+lea+eg +r+H++Dfdi++G+QW++L+q+LasR++g+psl+iT+++sp+s ++ el  t+e+L+ fA+e+++pfe
  SapurV1A.0033s0460.1.p 411 LQFANFTCNQALLEAFEGFDRIHVVDFDIGYGGQWASLMQELASRNGGAPSLKITAFVSPSSRDELELDFTQENLRIFASEINMPFE 497
                             *************************************************************************************** PP

                    GRAS 178 fnvlvakrledle.leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                              ++l  ++l++ + + +L +  +E++a+nl +  ++ +      +s+ + vL++vk+lsPkvvv  ++ +d+++ +F++++  a++ 
  SapurV1A.0033s0460.1.p 498 LEILSLESLSSGSwPMNLCTLDKEVTAINLPVGSFSNY------PSTLPLVLRFVKQLSPKVVVSLDRGCDRSDLPFAHHINLAIQS 578
                             ***9777776653155566666**********888877......445567************************************* PP

                    GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                             y++l++sl+a    + +  + +Er+l+++ i+++v  +         +   Wr+ + ++GF+p+++s+++++qa++ll++++++g++
  SapurV1A.0033s0460.1.p 579 YTSLLESLDAV-NVNLDILQRIERFLVQPGIEKMVLGRRGC----FHRTPPWRSLFLQSGFTPLTFSNFTESQAEYLLQRTPVRGFH 660
                             ********665.3455888899*************987665....66789************************************* PP

                    GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                             ve+++ slvl+W+++ Lvs+SaW
  SapurV1A.0033s0460.1.p 661 VEKKQSSLVLCWQQKDLVSASAW 683
                             *********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.434301664IPR005202Transcription factor GRAS
PfamPF035142.8E-92331683IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MKAMSLPCEG SQGKGLFDFS SSSSSSSTTT SSPDPFHQHH HKWQNNNSKQ SCDFLVGSTE  60
PTSVLETIGR QSPPPPSSTL SSFQGGGAST GTTNGVGAAG GSSLSVDEKC GPQLGMEDWE  120
SVLPGSPSQE QSIIRLIMGD IEDPALGLNK LIQGGSRSQD MELNASGFGV LDQVFGFEVP  180
NMCTASANLF VNSNNIDPSS FHGINLLPGL FQQHQQQAAF DQDEKPQILN PGVIINQNQH  240
QFVQNPAVVL PLSYAQLEEH HLLNARPVGA NYMPKVFDLR PPELFLPRQQ QQSHQFQMMQ  300
QQRQGMVTKQ KIASDELENQ QQLQQAIINP VCQAAELIET GNPVLAQGIL ARLNHQLSVP  360
ISKPYQRTAF YFKEALQLLL NVNNNNCIGT AYNLIFKIGA YKSFSEISPI LQFANFTCNQ  420
ALLEAFEGFD RIHVVDFDIG YGGQWASLMQ ELASRNGGAP SLKITAFVSP SSRDELELDF  480
TQENLRIFAS EINMPFELEI LSLESLSSGS WPMNLCTLDK EVTAINLPVG SFSNYPSTLP  540
LVLRFVKQLS PKVVVSLDRG CDRSDLPFAH HINLAIQSYT SLLESLDAVN VNLDILQRIE  600
RFLVQPGIEK MVLGRRGCFH RTPPWRSLFL QSGFTPLTFS NFTESQAEYL LQRTPVRGFH  660
VEKKQSSLVL CWQQKDLVSA SAWSCYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-323156845379Protein SCARECROW
5b3h_A8e-323156844378Protein SCARECROW
5b3h_D8e-323156844378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0033s0460.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451543.10.0scarecrow-like protein 6 isoform X1
TrEMBLA0A2K2BIS90.0A0A2K2BIS9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-150GRAS family protein