PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0033s0400.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 478aa    MW: 51754.4 Da    PI: 8.2816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0033s0400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.3e-15297342555
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  SapurV1A.0033s0400.1.p 297 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 342
                             9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-19290360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-18297350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-13297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-17297346No hitNo description
SMARTSM003532.2E-18298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MSHQCVPSWE LDDNPTTAPK LSLCSHSNSG APHMPMLNYE VAELTWENGQ LAMHGLGQPR  60
VPAKPIASTS PSKHTWDKPR ASGTLESIVN QATCIPQCNK QTFDNSGSDH ELVPWFNHHR  120
VSASATMTMD ALVPCSKRSD QERTTHVIDS SPAGLGTDCV VGCSTRVGSC SAPTATQNEA  180
GLLTRKREKV ARVPAPPEWS RDQSVNRGAA FSKKDSQQVT VDSSEREVGV GFTSTSFGSQ  240
ENTSSGTKPC TKTITADEND SVCHSGPQRE TGDEDDKKKG NGKSSLFTKR SRAAAIHNQS  300
ERKRRDKINQ RMKTLQKLVP NSSKTDKASM LDEVIEYLKQ LQAQVQMTSR MNMQPMMLPM  360
ALPQQFQMSM MAGMGMGMAG MGMGMGVVDM NSLAARSNIT GISPVLHPTA FMPMTTWDGS  420
NSHDRLPAAA PSTTAMPDPL SAFLASQSQP MTMDAYSRMA SMYQQLHQQP PASNSKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300305ERKRRD
2301306RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0033s0400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017451.10.0PREDICTED: transcription factor UNE10-like
SwissprotQ8GZ381e-103UNE10_ARATH; Transcription factor UNE10
TrEMBLU5GLG20.0U5GLG2_POPTR; BHLH family protein
STRINGPOPTR_0002s14430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-98bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]