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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0032s0260.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 184aa MW: 20591.2 Da PI: 6.9486 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 9 | 61 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 r+ + +Er+RR++++ +++L +l+P+ + + + ls + L +A YIk Lq SapurV1A.0032s0260.2.p 9 RTDRKTAERNRRNQMKALYSQLNSLVPHqN---SREPvLSLPDQLNEAASYIKRLQ 61 778899**********************55...66667*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.48E-6 | 5 | 65 | No hit | No description |
PROSITE profile | PS50888 | 11.458 | 7 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-12 | 7 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-8 | 9 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-11 | 9 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0045 | 13 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MENNPSSSRT DRKTAERNRR NQMKALYSQL NSLVPHQNSR EPVLSLPDQL NEAASYIKRL 60 QTNLEKMKEK KDSLMGVERT NYASMASCNG TTTGLRPPQI EVREMGSTLE VVLITGLDSQ 120 FMFNETIRVL HEEGAEIINA SFSVVEDTVF HTIHSKVEDS APSNGAARIS QRLKKFVQDD 180 CAF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0032s0260.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024438591.1 | 1e-121 | transcription factor bHLH162-like | ||||
Swissprot | F4JIJ7 | 1e-48 | BH162_ARATH; Transcription factor bHLH162 | ||||
TrEMBL | A0A3N7EG36 | 1e-120 | A0A3N7EG36_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s05320.1 | 1e-120 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 5e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0032s0260.2.p |
Publications ? help Back to Top | |||
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