PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0031s0360.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 111aa MW: 12479.3 Da PI: 7.8433 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.3 | 2.6e-11 | 5 | 34 | 14 | 45 |
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwq 45 +++ +G++ W++Iar ++ gR+++ +k++w+ SapurV1A.0031s0360.1.p 5 YYHEIYGNK-WAKIARFLP-GRSDNAIKNYWN 34 5899*****.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.698 | 1 | 41 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-4 | 1 | 39 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.06E-10 | 2 | 44 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.31E-8 | 3 | 37 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-14 | 3 | 38 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.4E-9 | 6 | 34 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MTLTYYHEIY GNKWAKIARF LPGRSDNAIK NYWNCILKKN LDSNSLHGCT MDLFIVSSLN 60 SYSCDTELNC LKLKERQSFE KAAFVNENIE LRCSAETSAS LFGIVVAVVV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0031s0360.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022739.1 | 4e-56 | PREDICTED: uncharacterized protein LOC105124416 | ||||
Refseq | XP_011022740.1 | 4e-56 | PREDICTED: uncharacterized protein LOC105124416 | ||||
Refseq | XP_011033774.1 | 4e-56 | PREDICTED: myb-related protein A-like | ||||
Refseq | XP_011033775.1 | 4e-56 | PREDICTED: myb-related protein A-like | ||||
Refseq | XP_011033776.1 | 4e-56 | PREDICTED: myb-related protein A-like | ||||
Refseq | XP_011033777.1 | 4e-56 | PREDICTED: myb-related protein A-like | ||||
Refseq | XP_011033778.1 | 4e-56 | PREDICTED: myb-related protein A-like | ||||
TrEMBL | A0A3N7G6W9 | 2e-52 | A0A3N7G6W9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s12390.1 | 2e-53 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13301 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 2e-16 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0031s0360.1.p |