PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0031s0130.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 563aa    MW: 61089.6 Da    PI: 7.2575
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0031s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.5e-32212269260
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  SapurV1A.0031s0130.1.p 212 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSN-DGQITEIVYKGTHDHPK 269
                             8****************************************.***************85 PP

2WRKY104.46.3e-33377435159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK v+g+++prsYY+Ct agCpv+k ver+++dpk+v +tYeg+Hnhe
  SapurV1A.0031s0130.1.p 377 LDDGYRWRKYGQKLVRGNPNPRSYYKCTNAGCPVRKLVERASHDPKAVMTTYEGKHNHE 435
                             59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.848206270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-27210270IPR003657WRKY domain
SuperFamilySSF1182905.49E-25210270IPR003657WRKY domain
SMARTSM007743.9E-34211269IPR003657WRKY domain
PfamPF031069.4E-25212268IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.8E-36362437IPR003657WRKY domain
SuperFamilySSF1182901.05E-28369437IPR003657WRKY domain
PROSITE profilePS5081136.977372437IPR003657WRKY domain
SMARTSM007743.3E-38377436IPR003657WRKY domain
PfamPF031067.0E-26378435IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MNNVKSHPEV SDGSDQTMPD AGGSARYKLM SPAKLPISRS SCIMISPGLS PTSFLESPVL  60
LSNVKVEPSP TTGTFTNPQT VPGSLSSTSY SATSVSSTTV GERKSNCFEF RPHARSDMVS  120
ADMNHQQSAQ CVEVQRQLQS QSFASSPSVK GEMAVCTNEL TLSPPLHMIT SGSSAPAEVD  180
SDELNQMGLS SSGLRASQSD HKTGSAPTMS SDDGYNWRKY GQKHVKGSEF PRSYYKCTHP  240
NCEVKKLFER SNDGQITEIV YKGTHDHPKP QPSRRYASGS VLFTQEERFD KFSSLPSQDD  300
KSPRVCGQVS HAIEPDSAPE LSPGTTNDDT GEGAEDDEDP FLKRRRLDAG GFDVTPVIKP  360
IREPRVVVQT LSEIDILDDG YRWRKYGQKL VRGNPNPRSY YKCTNAGCPV RKLVERASHD  420
PKAVMTTYEG KHNHEVPTAK TNSHDTAGPS AGNGTSRTRP DKNETISLHL GVGISSTSEN  480
WSGDQRQALH AELVGIENQS SGSSFRIVRA SPIAAYYGVL NGGMNQYGSR QIPSEGRRIE  540
IPPLSHSSYP YPQNVGSLLS GP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-34212437877Probable WRKY transcription factor 4
2lex_A5e-34212437877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342346KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0031s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080470.0AC208047.1 Populus trichocarpa clone JGIACSB05-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437369.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2I4KKZ50.0A0A2I4KKZ5_POPTR; WRKY family protein
TrEMBLA0A3N7FUJ40.0A0A3N7FUJ4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s37260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein