PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0030s0420.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 534aa    MW: 59071.9 Da    PI: 5.3383
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0030s0420.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS447.59e-1371635331374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l+e+L +cA a+s++d+  +++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +    ++ l++++l++ev
  SapurV1A.0030s0420.2.p 163 LKEALCTCALAISNSDMFTVEWLMSELRQMVSVTGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPA---GADLLSYMHLLYEV 246
                             5789*****************************************************************9...9************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P++kf+++ aN aI +av+ e  vHiiDf+i qG QW++LlqaLa+Rp+gpp++RiTg+++++s   +   l  +g+rL k+Ae+ 
  SapurV1A.0030s0420.2.p 247 CPYFKFGYMSANGAIADAVKDEISVHIIDFQIAQGSQWVTLLQALAARPGGPPHIRITGIDDSTSAyaRGGGLDIVGKRLLKLAESY 333
                             **************************************************************998899999**************** PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfef++ +  + +++++e+L v+pgEa++Vn++l+lh+l+d sv ++++rd++L+lvkslsPkvv+++eqe+++++ +F++rf+e
  SapurV1A.0030s0420.2.p 334 KVPFEFHA-AGVSASEIQVENLGVQPGEAVVVNFALSLHHLPDGSVGTQNHRDRLLRLVKSLSPKVVTLIEQESNTSTVPFFARFVE 419
                             ********.8999************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             +l+yy a+f+s++++lpre++eri+vE+++l+re+vn++acegaer+erhe+l+kW +r+e+aGF+p+pls++++ ++k+ll+++++
  SapurV1A.0030s0420.2.p 420 TLNYYQAIFESIDVTLPREHKERINVEQHCLAREVVNIIACEGAERVERHEHLGKWISRFEMAGFTPYPLSSFVNFTIKTLLQNYSE 506
                             **************************************************************************************6 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                             + y++ee++g+l+lgW++rpLv+++aWr
  SapurV1A.0030s0420.2.p 507 K-YTLEERDGALFLGWMNRPLVAACAWR 533
                             5.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.947137514IPR005202Transcription factor GRAS
PfamPF035143.1E-134163533IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MQTSQKKKIS DGSRRFGDQP MQYQESYSCP PIQNIDVGSQ GTHLLAMTYD QYCTLESSSE  60
ISACPVHNSP STASSSPNEC VVSQPNSQSY HSDLQDSSEN TSGSPGSESY VTHKLRELET  120
AMLGPDSDNL DMYNMTAMPG PNQIVSEAEK WKFLVEMMSR GDLKEALCTC ALAISNSDMF  180
TVEWLMSELR QMVSVTGEPI QRLGAYMLEG LVARLASSGS SIYKALRCKE PAGADLLSYM  240
HLLYEVCPYF KFGYMSANGA IADAVKDEIS VHIIDFQIAQ GSQWVTLLQA LAARPGGPPH  300
IRITGIDDST SAYARGGGLD IVGKRLLKLA ESYKVPFEFH AAGVSASEIQ VENLGVQPGE  360
AVVVNFALSL HHLPDGSVGT QNHRDRLLRL VKSLSPKVVT LIEQESNTST VPFFARFVET  420
LNYYQAIFES IDVTLPREHK ERINVEQHCL AREVVNIIAC EGAERVERHE HLGKWISRFE  480
MAGFTPYPLS SFVNFTIKTL LQNYSEKYTL EERDGALFLG WMNRPLVAAC AWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-621655336375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0030s0420.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014635.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_011014636.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A1X9QM520.0A0A1X9QM52_9ROSI; Phytochrome A signal transduction 1
STRINGPOPTR_0001s37270.20.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]