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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0029s0640.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 28774.8 Da PI: 8.5976 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.8 | 6.2e-11 | 75 | 122 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr +P + +K++Ka L ++ +k+L SapurV1A.0029s0640.1.p 75 KSHSEAERRRRERINAHLATLRGFVPCS----TEKMDKAKLLAAVISQVKEL 122 58*************************8....79********9999888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.234 | 72 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.84E-12 | 75 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.1E-9 | 75 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-12 | 76 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-8 | 78 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 2.71E-4 | 157 | 225 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MFDYGFNPNS SSGSGYMSTF DPFPRSLQGF SDVLQGRPMV SQTLVLDAEM GELVKAPARV 60 GKKGISETKA LAALKSHSEA ERRRRERINA HLATLRGFVP CSTEKMDKAK LLAAVISQVK 120 ELKRDALEAC KGHLIPTADD EVKVETYFDG TLYFKASICC DYRPELLSDI RKAVDSLPLK 180 MVNAEMSTLG SRLKNEFVFT NSRNKNSADD AEATQILTDS IHQALTSVLE KGIASPEYSP 240 RTTLPNKKRM VTFFDSSSSS S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 85 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0029s0640.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214284 | 1e-142 | AC214284.1 Populus trichocarpa clone POP076-F15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011005482.1 | 1e-152 | PREDICTED: transcription factor bHLH106-like | ||||
TrEMBL | B9H2J0 | 1e-146 | B9H2J0_POPTR; Uncharacterized protein | ||||
STRING | XP_002522566.1 | 1e-108 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8986 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 2e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0029s0640.1.p |