PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0029s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 408aa    MW: 46596.1 Da    PI: 5.3586
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0029s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.61.9e-33141052102
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl k+ye+++d+++++++sws++++sf v ++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +
  SapurV1A.0029s0230.1.p  14 FLAKTYEMVDDPSTDSIVSWSQSNKSFTVRNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANEDFIR 91 
                             9***************************************************************9998.........********** PP

                             XXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkks 102
                             g+  l+++i+r+k 
  SapurV1A.0029s0230.1.p  92 GQPLLMKNIHRRKP 105
                             ***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.9E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.0E-3710103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.6E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDESQGSSNS LPPFLAKTYE MVDDPSTDSI VSWSQSNKSF TVRNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANEDFI RGQPLLMKNI HRRKPVHSHS LQNLQGQGSN  120
LLTDSERQSM KDDIERLKRD KESLILELQM QEKERKGIEM QIEGLKKKLQ HMEKRQETMV  180
SFVTRVLPKP GLALNLMPHL EGHDRKRRLP RIGCLHGEAS SNEDNQMVTS QALSRESEDD  240
NPVSLLNMEQ FEQLESFLTF WENMVHDVVQ THNHNTSTIE MDESTSGAES PAISSVQLIA  300
DFRPKSPVID MNSEPSIAVV PEPVSPKEQP AGTAPAVATG ANDVFWEQFL TENPGSTDTQ  360
EAQSERKDSD GRKNEIKPVD PRKFWWNMRN VNNLTEQMGH LTPAERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24410320129Heat shock factor protein 1
5d5v_B2e-24410320129Heat shock factor protein 1
5d5v_D2e-24410320129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0029s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139810.0KP013981.1 Populus simonii heat shock transcription factor A4b2 (HsfA4b2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305052.20.0heat stress transcription factor A-4c isoform X1
SwissprotO494031e-138HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A0N7DK340.0A0A0N7DK34_9ROSI; Heat shock transcription factor A4b2
STRINGPOPTR_0004s06090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-130heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]