PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0028s0640.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 243aa    MW: 27492.3 Da    PI: 8.6425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0028s0640.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.8e-141562148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+W++eEd++l+  ++++G  +W   ++  g+ R++k+c++rw +yl
  SapurV1A.0028s0640.1.p 15 RGAWSPEEDQKLISHINRHGIWNWIELPKAAGLSRSGKSCRLRWMNYL 62
                            89******************99************************97 PP
2Myb_DNA-binding44.82.8e-1468111146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+++ eE e ++++++ lG++ W++Ia++++ gRt++++k+ w++
  SapurV1A.0028s0640.1.p  68 RGNFSMEEVEAILKLHEVLGNR-WSAIAAKLP-GRTDNEIKNLWNN 111
                             89********************.*********.***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.7931062IPR017930Myb domain
SuperFamilySSF466891.72E-2812109IPR009057Homeodomain-like
SMARTSM007173.0E-101464IPR001005SANT/Myb domain
PfamPF002499.5E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-211669IPR009057Homeodomain-like
CDDcd001675.42E-81762No hitNo description
PROSITE profilePS5129423.05263117IPR017930Myb domain
SMARTSM007172.7E-1267115IPR001005SANT/Myb domain
PfamPF002491.2E-1268112IPR001005SANT/Myb domain
CDDcd001671.76E-870113No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2470116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MRKIALSSQN LPLKRGAWSP EEDQKLISHI NRHGIWNWIE LPKAAGLSRS GKSCRLRWMN  60
YLRPGIKRGN FSMEEVEAIL KLHEVLGNRW SAIAAKLPGR TDNEIKNLWN NRLKKKHVEN  120
SIKTAVQATK LERTQTSTVE FWERKLSEID DVPVIPTAPK ILKPEDSAGS PKTNISSSFN  180
PVNHLIFNEN QVIEENVGLL ESTGEQCLRG PQFSAESQTC RVEDYGDTCT VEMWVQELLH  240
GV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251011622127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0028s0640.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305620.31e-139transcription factor MYB14
TrEMBLA0A2K2ANY41e-137A0A2K2ANY4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s02570.11e-138(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15840411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-51myb domain protein 15