PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0028s0480.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 209aa    MW: 23456.9 Da    PI: 5.9225
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0028s0480.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.1e-104084554
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            +  +ErrRR+++ +++ +Lr l+P       + ++K +i e A+ YI++L
  SapurV1A.0028s0480.1.p 40 NLHAERRRREKLSNRLLTLRALVPII-----TNMNKGTIIEDAITYIQEL 84
                            5579*********************6.....58***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-1535101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.9033584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1337102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-103789No hitNo description
PfamPF000102.4E-73984IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-104190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDYLAMNELG LDDQHGSFRG RMGRNKRTSY DETSGYKSKN LHAERRRREK LSNRLLTLRA  60
LVPIITNMNK GTIIEDAITY IQELKKNVEA LTDMLQEMEA SSSEEETKTR VSEIDASEEM  120
KQCGIKEDVQ VSNIDGDKLW IKIILEKKRG GFGRLMEKMA CFGLELIDSN VTTSKGAMLV  180
TACVEGAFGD NLTVQQTKEL LTQIIKGI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14348ERRRRE
24449RRRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0028s0480.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455681.11e-123transcription factor DYT1
TrEMBLA0A2K2AP271e-125A0A2K2AP27_POPTR; Uncharacterized protein
STRINGPOPTR_0004s02920.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-50bHLH family protein