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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0027s0820.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GeBP | ||||||||
Protein Properties | Length: 409aa MW: 45467.9 Da PI: 4.3127 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 115.9 | 2.4e-36 | 129 | 225 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 lfqrlw++eDei lLqG++++++k ++ ++ d+ fy+++k++++++++k+qlveK+rrLKkK+++ +k+++gk++ f+++hdq SapurV1A.0027s0820.1.p 129 LFQRLWTDEDEIELLQGFLEYTTKGTANHHHnDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKINTGKDFCFKSPHDQA 215 79*******************77766655445******************************************************* PP DUF573 88 ifelskkiWg 97 +fe+s+kiW SapurV1A.0027s0820.1.p 216 TFEISRKIWS 225 *********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.0E-34 | 130 | 225 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MAAEQDDTVF DQDLEVDDED DDDQSSQSQN DDLEDDLEIE NDDTLPENDD VLSEELLEDD 60 DTSTSAAVTT ASIPSVTTVS TTAVTTSTTT VVATDSTLDE SKRQRVSPEA TVLLSQDSKK 120 PQFDDTRRLF QRLWTDEDEI ELLQGFLEYT TKGTANHHHN DTALFYDQIK SKLQLDFNKN 180 QLVEKLRRLK KKYRNVLNKI NTGKDFCFKS PHDQATFEIS RKIWSSTGKI AGFSNEDGNN 240 LDDDDGGNPN YNNHTVMMDG DVVVKIEDHK STPRSRKRSR SRSVGVKMEE NRVLNDGFVG 300 NETNVTGGGG GNGNVSSVIE ETVRSCLSPL FKELTSNMAG AGMGGVGRGV GRLAMNAMPL 360 SFGPGDAMMM DEKWRKQHIL ELEVYSKRLE LVQDQIRAQL DELRSMGD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 281 | KRSRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0027s0820.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025503.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
TrEMBL | A0A2K2C3X3 | 0.0 | A0A2K2C3X3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s06130.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 6e-56 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0027s0820.1.p |