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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
SapurV1A.0027s0240.2.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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| Family |
C3H |
| Protein Properties |
Length: 359aa MW: 40079.7 Da PI: 7.963 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0027s0240.2.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 26.7 | 9.4e-09 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C f+++ G+C yG+rC++ H+
SapurV1A.0027s0240.2.p 34 ICTFYQK-GICLYGSRCRYDHV 54
7******.*************7 PP
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| 2 | zf-CCCH | 21.2 | 5.2e-07 | 139 | 161 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+++C+ fa+ G C++Gd+C+ +Hg
SapurV1A.0027s0240.2.p 139 RSICS-FAAAGSCPRGDKCPHIHG 161
67899.**************9998 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 13.892 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 9.1E-4 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.49E-7 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.587 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.8E-4 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.35E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 8.3E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.6E-5 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.056 | 136 | 163 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0022 | 137 | 162 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.0E-4 | 139 | 161 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 141 | 161 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 1.09E-12 | 198 | 269 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 4.1E-10 | 200 | 264 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| CDD | cd00162 | 4.11E-4 | 204 | 264 | No hit | No description |
| SMART | SM00184 | 3.4E-7 | 205 | 262 | IPR001841 | Zinc finger, RING-type |
| Pfam | PF00097 | 2.4E-7 | 205 | 262 | IPR018957 | Zinc finger, C3HC4 RING-type |
| PROSITE profile | PS50089 | 12.357 | 205 | 263 | IPR001841 | Zinc finger, RING-type |
| PROSITE pattern | PS00518 | 0 | 229 | 238 | IPR017907 | Zinc finger, RING-type, conserved site |
| SMART | SM00356 | 0.13 | 292 | 320 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.582 | 292 | 321 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 359 aa
Download sequence Send
to blast |
MSKRLLCKFF AHGACLKGEH CEFSHDWKDP PNNICTFYQK GICLYGSRCR YDHVKSSRPE 60
STASSSLAIL ASNSVSLTLP ARTVSSGATA LLSVTPELSA SSRPFIASTM PAWNLESVQH 120
DFLEDGEVIQ SRNVNPADRS ICSFAAAGSC PRGDKCPHIH GDLCAYCGKH CLHPFRPDER 180
DEHLKACEKK QKNLDLLKYS QEIECSVCLD RVLSKPTVAE RKFGLLSECD HPFCISCIRN 240
WRSSSPTSGM DVNSSLRACP ICRKLSYFVI PSVIWYSSKE EKQEIVDTYK EKLRSIDCKH 300
FDFGNGNCPF GTSCFYKHAY RDGRLEEVVL RHLGAEDGQS LIAKNIRLSD FLGSLQIR*
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