PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0025s0470.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | E2F/DP | ||||||||
Protein Properties | Length: 429aa MW: 48454.1 Da PI: 5.6964 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 84.3 | 9.8e-27 | 159 | 223 | 1 | 70 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 r+++sL+llt+kf+kl++++++g+++ln+ a+ L +v ++RRiYDi+NVLe+++liek++kn+i+wk SapurV1A.0025s0470.1.p 159 RYDSSLGLLTKKFVKLIQEAQDGTLDLNKTAEML---EV--QKRRIYDITNVLEGIGLIEKTSKNHIHWK 223 6899******************************...99..****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.1E-27 | 156 | 223 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.6E-34 | 159 | 224 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.98E-18 | 159 | 222 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 2.9E-25 | 161 | 223 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF144074 | 4.97E-26 | 237 | 339 | No hit | No description |
CDD | cd14660 | 4.20E-36 | 239 | 339 | No hit | No description |
Pfam | PF16421 | 2.5E-23 | 241 | 337 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000902 | Biological Process | cell morphogenesis | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MANASEDPTR TINPSQFHFQ LLHSHSHFQN QNLCSLNNPP PSNRLFPSSF RKPHHLPPPP 60 PDNNNTPLGF QFHSSNTHSA FRDVALEMKS ESDDHEVRAT RDAAFPAQSD IVTDLTLAPR 120 SSFGGKHKNK SRVPKHAKSV TQRLNAESHN GLNLASGCRY DSSLGLLTKK FVKLIQEAQD 180 GTLDLNKTAE MLEVQKRRIY DITNVLEGIG LIEKTSKNHI HWKKEFDDCE QKMLDDHARI 240 KAEVESLYTE EYRLEESIRD RQELLRGLKE DAVRRKHLFL TEEDITSLPC FQNQMLFAIK 300 APEASYLEVP DPDEDIGSPL YKMTVRSTNG PIDVYLLSKC KQGEDVTVEH VEPTETSSWN 360 SSQCREQDAG LTSECRGDQN SCEPFSSLTL EASGICKLIP ADCNIIDDYW FTTDDSVSIS 420 KLWVDRIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 8e-23 | 159 | 223 | 7 | 72 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00190 | DAP | Transfer from AT1G47870 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0025s0470.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024450667.1 | 0.0 | transcription factor E2FC | ||||
TrEMBL | A0A2K2BC95 | 0.0 | A0A2K2BC95_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s02500.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11885 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47870.2 | 1e-88 | E2F/DP family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0025s0470.1.p |