PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0024s0300.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

HD-ZIP

Protein Properties

Length: 815aa MW: 88614.6 Da PI: 6.2147

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0024s0300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.4	7.9e-21	114	169	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k SapurV1A.0024s0300.2.p 114 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 169 688999***********************************************999 PP
2	START	193.6	9.2e-61	324	549	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 ela++a++elvk+a+a+ep+W s e++n +e l++f++ + + ea+r++g+v+ ++ lve+l+d+ +W e+++ SapurV1A.0024s0300.2.p 324 ELALAAMDELVKMAQADEPLWIGSFeggrEILNHEEHLRSFTPCIGmkpsgFVREASRETGMVIINSLALVETLMDSD-RWAEMFPc 409 5899****************9999***********9998899999999********************.**** PP ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEE CS START 78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgil 153 + +t++vi sg g lqlm aelq+l+plvp R++ f+R+++q+ +g+w++vdvS+d ++ + + + +++lpSg++ SapurV1A.0024s0300.2.p 410 miaRTSTTDVIASGmggtrnGSLQLMHAELQVLTPLVPvREVNFLRFCKQHAEGVWAVVDVSIDAIRETSGaPPTFLNCRRLPSGCV 496 *************************************************************9999998999******** PP EEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 154 iepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++++ng+skvtwveh++++++++h+l+r+l++sg+ +ga++w atlqrqce+ SapurV1A.0024s0300.2.p 497 VQDMPNGYSKVTWVEHAEYDESQVHQLYRPLISSGMGFGAQRWIATLQRQCEC 549 *************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.28E-20	100	171	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.6E-22	101	171	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	111	171	IPR001356	Homeobox domain
SMART	SM00389	1.7E-17	112	175	IPR001356	Homeobox domain
CDD	cd00086	2.00E-18	113	171	No hit	No description
Pfam	PF00046	2.1E-18	114	169	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	146	169	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.618	315	552	IPR002913	START domain
SuperFamily	SSF55961	6.99E-33	317	549	No hit	No description
CDD	cd08875	1.89E-124	319	548	No hit	No description
Pfam	PF01852	1.8E-52	324	549	IPR002913	START domain
SMART	SM00234	1.9E-43	324	549	IPR002913	START domain
SuperFamily	SSF55961	2.84E-23	578	807	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence Send to blast
MSFGGFLENT SPGGGGGARF VADIPYNNNN NMSTGAIAQT RLVSPSITKS MFNSPGLSLA 60 LPNIDGQGDI SRMAENFEAS VGRRSREEEH ESRSGSDNMD GASGDDQDDN PPRKKRYHRH 120 TPQQIQELEA LFKECPHPDE KQRLELSRRL CLETRQVKFW FQNRRTQMKT QLERHENSLL 180 RQDNDKLRAE NMSIRDAMRN PSCSNCGGPA IIGDISLEEQ HLRIENARLK DELDRVCALA 240 GKFLGRPISS LASPLGPPMP NSSLELAVGS NGFAGMSTVA TTLPLGPHFE GGISGALPMV 300 TQTRLATAGV PGTDRSLERS MFLELALAAM DELVKMAQAD EPLWIGSFEG GREILNHEEH 360 LRSFTPCIGM KPSGFVREAS RETGMVIINS LALVETLMDS DRWAEMFPCM IARTSTTDVI 420 ASGMGGTRNG SLQLMHAELQ VLTPLVPVRE VNFLRFCKQH AEGVWAVVDV SIDAIRETSG 480 APPTFLNCRR LPSGCVVQDM PNGYSKVTWV EHAEYDESQV HQLYRPLISS GMGFGAQRWI 540 ATLQRQCECL AILMSSNVPS RDHTAITTSG RRSMLKLAQR MTGNFCAGVC ASTVHKWNKL 600 NAGNVDEDVR VMTRKSVDDP GEPPGIVLSA ATSVWLPVSP QRLFDFLRNE RLRSEWDILS 660 NGGPMQEMAH IAKGQDHGNC VSLLRASAMN ASQSSMLILQ ETCIDAAGSL VVYAPVDTPA 720 MHVVMNGGDS AYVALLPSGF AIVPDGPQTT SGDPTTHNNG GGQERVGGSL LTVAFQILVN 780 SLPTAKLTVE SVETVKNLIS CTVQKIKAAL QCES*

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence Send to blast

MSFGGFLENT SPGGGGGARF VADIPYNNNN NMSTGAIAQT RLVSPSITKS MFNSPGLSLA  60
LPNIDGQGDI SRMAENFEAS VGRRSREEEH ESRSGSDNMD GASGDDQDDN PPRKKRYHRH  120
TPQQIQELEA LFKECPHPDE KQRLELSRRL CLETRQVKFW FQNRRTQMKT QLERHENSLL  180
RQDNDKLRAE NMSIRDAMRN PSCSNCGGPA IIGDISLEEQ HLRIENARLK DELDRVCALA  240
GKFLGRPISS LASPLGPPMP NSSLELAVGS NGFAGMSTVA TTLPLGPHFE GGISGALPMV  300
TQTRLATAGV PGTDRSLERS MFLELALAAM DELVKMAQAD EPLWIGSFEG GREILNHEEH  360
LRSFTPCIGM KPSGFVREAS RETGMVIINS LALVETLMDS DRWAEMFPCM IARTSTTDVI  420
ASGMGGTRNG SLQLMHAELQ VLTPLVPVRE VNFLRFCKQH AEGVWAVVDV SIDAIRETSG  480
APPTFLNCRR LPSGCVVQDM PNGYSKVTWV EHAEYDESQV HQLYRPLISS GMGFGAQRWI  540
ATLQRQCECL AILMSSNVPS RDHTAITTSG RRSMLKLAQR MTGNFCAGVC ASTVHKWNKL  600
NAGNVDEDVR VMTRKSVDDP GEPPGIVLSA ATSVWLPVSP QRLFDFLRNE RLRSEWDILS  660
NGGPMQEMAH IAKGQDHGNC VSLLRASAMN ASQSSMLILQ ETCIDAAGSL VVYAPVDTPA  720
MHVVMNGGDS AYVALLPSGF AIVPDGPQTT SGDPTTHNNG GGQERVGGSL LTVAFQILVN  780
SLPTAKLTVE SVETVKNLIS CTVQKIKAAL QCES*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0024s0300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011023405.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A385JHT9	0.0	A0A385JHT9_POPTO; Homeodomain protein
TrEMBL	B9GPV9	0.0	B9GPV9_POPTR; Uncharacterized protein
STRING	POPTR_0002s15610.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0024s0300.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]