PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0023s0580.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 486aa    MW: 52748.2 Da    PI: 8.3426
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0023s0580.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17165214155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  SapurV1A.0023s0580.2.p 165 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 214
                             78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.91E-12165224No hitNo description
PfamPF008475.6E-9165214IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-16165223IPR016177DNA-binding domain
SMARTSM003801.3E-32166228IPR001471AP2/ERF domain
PROSITE profilePS5103217.794166222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-17166223IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-6257301IPR016177DNA-binding domain
CDDcd000186.45E-13257302No hitNo description
SMARTSM003801.1E-11258306IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MLDLNLGITS SDSCCDDNNK SNMMVIVDSG YHQEKEAASR NQQMEDSATS NSSITNTTED  60
ENSSNISNSA FIFDILKKDG NFTNTGTIIA TKETNPNCDF TTQQLFPGST GLGLNFQPGL  120
AVTSGTRPQW LKLSQMGSSP EAELNVQQKQ QQTRKSRRGP RSKSSQYRGV TFYRRTGRWE  180
SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN FNLSDYEEDM KQMKNLSKEE  240
FVHILRRQSN GFSRGSSKYR GVTLHKCGRW EARTGQSAGN KAYDKAALKF NGTEAVTNFE  300
PSVYEGDMIS YPNNGGSGHS LDLSLGISRP SNDPKGSDNV GDLHCRYGGS EIPSKERQVV  360
EGAAAAHMGL QTLHGSPVAA RNLPAWSGIY PGLLPSYEER ATEKRVAAVS SPIFSSWPWQ  420
INGGNSVVAT MSQLSVAASS GFSASTVTAS SATLPFNHQN HFAGNLRLSA PTPSATNPSL  480
YSYKS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0023s0580.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466943.10.0ethylene-responsive transcription factor RAP2-7 isoform X3
SwissprotQ9SK035e-89RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLB9HU090.0B9HU09_POPTR; Uncharacterized protein
STRINGPOPTR_0010s22320.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.12e-77related to AP2.7