PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0023s0240.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 921aa    MW: 101702 Da    PI: 7.759
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0023s0240.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-08803844346
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             +WT +E e++ + ++ +G++ +++Ia+ +  +++  +c+++++k
  SapurV1A.0023s0240.3.p 803 PWTSDEKEIFMQKIATFGKD-FRKIASFLD-HKSTADCVEFYYK 844
                             8*****************99.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.26E-14787847IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-5795845IPR009057Homeodomain-like
PROSITE profilePS5129315.52799850IPR017884SANT domain
SMARTSM007178.8E-8800848IPR001005SANT/Myb domain
PfamPF002493.6E-6802844IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 921 aa     Download sequence    Send to blast
MPPEPLPWDR KDCFKERKHE RSETTSSSFG GGSTPRWREF SFSSSSNNGS PCDFNRWGPH  60
DFRRPPGHGK QGGWHMLSEE SGHVFSPYRM SDKMLEDENC RLFSRGDGRY GRNNRENRGC  120
FSQRDWRGGH SWEMINGSPN MPARQRDVNN DQRSFDEMLM YPPSHPAHSE FANSWDHHQL  180
KDQDDNNKMG DVVSLGTDQR GDKEIPLDWK PLKWTRSGSL SSRGSGFSHS SSSKSLGGAD  240
SNEGKTELQP KNASPVQPPS VDAAACVTSA TPSEEVSSRK KARLGWGEGL AKYEKKKVEG  300
PDASENKDGA AVSAINMEPI HFLTSNLADK SPRVMGFSDC ASPATPSSVA CSSSPGLEEK  360
TFLKSTNADN VASNLCGSPS VGSQSHIEGL SFNLEKMDVG SIGNLGSSLA ELLQSDDPSS  420
MDSGFMRPTA MNKLLVWKGD LSKALELTES EIDSLENELK SMKFEYGSRC PCPAASTPLF  480
VSDVKPCNVQ GVASNSVPRP SPLQVASHGD GIVEKVSFYN GGLEVHGDVK DNDIDSPGTA  540
TSKLVEPLCL VRIDSSSFVL KNDFDGIQSA RMGLKVSVPC ADDEETGVFA SKDSVPSSVD  600
VISDTNGEDN LCSLILASNK ESASGASEVF NKLLPSDQCK FDFSAVTNGS SLQTDDLVVK  660
KIAKRKRLLR FKEIAVTLKF KALQHLWKED MQLLSIRKYR VKSQKKCEPI LRTTHSGYQK  720
HRSSIRARLS SPAGNLSLVP TTETLNFTSK LLSDSQVRPY RNALKMPAII LDKKEKMVSR  780
FISSNGLVED PYAVEKERAM INPWTSDEKE IFMQKIATFG KDFRKIASFL DHKSTADCVE  840
FYYKNHKSDC FEKTKKSEQT KTSTNYLMAS STKWNRELNA ASLDILGVAS RIAADADHAM  900
NRMKERLLLL MFWVHCPRRP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C1e-14761852494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D1e-14761852494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0023s0240.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316354.20.0uncharacterized protein LOC7468404 isoform X1
RefseqXP_024466716.10.0uncharacterized protein LOC7468404 isoform X1
RefseqXP_024466717.10.0uncharacterized protein LOC7468404 isoform X2
TrEMBLB9HU460.0B9HU46_POPTR; Uncharacterized protein
STRINGPOPTR_0010s22670.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-141MYB family protein