PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0023s0240.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 1255aa MW: 137430 Da PI: 5.4665 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.5e-08 | 803 | 844 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT +E e++ + ++ +G++ +++Ia+ + +++ +c+++++k SapurV1A.0023s0240.2.p 803 PWTSDEKEIFMQKIATFGKD-FRKIASFLD-HKSTADCVEFYYK 844 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 31.9 | 3.2e-10 | 1002 | 1042 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++av +G++ ++ I+r + +Rt+ qck ++ SapurV1A.0023s0240.2.p 1002 DWTDEEKSIFIQAVSSYGKD-FTMISRVVR-TRTRDQCKVFFS 1042 5*****************99.*********.********8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.21E-14 | 787 | 847 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 795 | 845 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.52 | 799 | 850 | IPR017884 | SANT domain |
SMART | SM00717 | 8.8E-8 | 800 | 848 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-6 | 802 | 844 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 11.3 | 997 | 1049 | IPR017884 | SANT domain |
SMART | SM00717 | 2.4E-8 | 999 | 1047 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-7 | 1000 | 1043 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.5E-8 | 1002 | 1042 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.59E-7 | 1003 | 1041 | No hit | No description |
SuperFamily | SSF46689 | 1.4E-10 | 1003 | 1049 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1255 aa Download sequence Send to blast |
MPPEPLPWDR KDCFKERKHE RSETTSSSFG GGSTPRWREF SFSSSSNNGS PCDFNRWGPH 60 DFRRPPGHGK QGGWHMLSEE SGHVFSPYRM SDKMLEDENC RLFSRGDGRY GRNNRENRGC 120 FSQRDWRGGH SWEMINGSPN MPARQRDVNN DQRSFDEMLM YPPSHPAHSE FANSWDHHQL 180 KDQDDNNKMG DVVSLGTDQR GDKEIPLDWK PLKWTRSGSL SSRGSGFSHS SSSKSLGGAD 240 SNEGKTELQP KNASPVQPPS VDAAACVTSA TPSEEVSSRK KARLGWGEGL AKYEKKKVEG 300 PDASENKDGA AVSAINMEPI HFLTSNLADK SPRVMGFSDC ASPATPSSVA CSSSPGLEEK 360 TFLKSTNADN VASNLCGSPS VGSQSHIEGL SFNLEKMDVG SIGNLGSSLA ELLQSDDPSS 420 MDSGFMRPTA MNKLLVWKGD LSKALELTES EIDSLENELK SMKFEYGSRC PCPAASTPLF 480 VSDVKPCNVQ GVASNSVPRP SPLQVASHGD GIVEKVSFYN GGLEVHGDVK DNDIDSPGTA 540 TSKLVEPLCL VRIDSSSFVL KNDFDGIQSA RMGLKVSVPC ADDEETGVFA SKDSVPSSVD 600 VISDTNGEDN LCSLILASNK ESASGASEVF NKLLPSDQCK FDFSAVTNGS SLQTDDLVVK 660 KIAKRKRLLR FKEIAVTLKF KALQHLWKED MQLLSIRKYR VKSQKKCEPI LRTTHSGYQK 720 HRSSIRARLS SPAGNLSLVP TTETLNFTSK LLSDSQVRPY RNALKMPAII LDKKEKMVSR 780 FISSNGLVED PYAVEKERAM INPWTSDEKE IFMQKIATFG KDFRKIASFL DHKSTADCVE 840 FYYKNHKSDC FEKTKKSEQT KTSTNYLMAS STKWNRELNA ASLDILGVAS RIAADADHAM 900 NSKQLCSGRI FSRGYRSSKI TEGDDVLRNE RETVAADVLG SLSSEAMSSC ITTSVDLMEG 960 YHEWKYQKAD FVAKAPSTSD VMQSFDEETC SDESCGEMDR IDWTDEEKSI FIQAVSSYGK 1020 DFTMISRVVR TRTRDQCKVF FSKARKCLGL DLMHPGTKNS RTPVGDDASG GGSDTEDACA 1080 MGTRSAICSD KLDSKIDEVL PSSILNTDRD ESDAEQMIGL HEDLNRTEGN NAPGVLDKND 1140 SKVDKNDFKV VDEMVSDPSE AGQSVDLSSD VDSKFKNAVH QSESVTQKML IVSANAESER 1200 DQVVDKGVSD VESGSVIGAV DVSTSNANNA VELKAAAEVS GNGLENGSTE QKLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 1e-14 | 761 | 852 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 1e-14 | 761 | 852 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0023s0240.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024466717.1 | 0.0 | uncharacterized protein LOC7468404 isoform X2 | ||||
TrEMBL | B9HU46 | 0.0 | B9HU46_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s22670.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 0.0 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0023s0240.2.p |