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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0022s0280.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NF-YC | ||||||||
Protein Properties | Length: 272aa MW: 30285.4 Da PI: 6.885 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.5 | 1.2e-55 | 98 | 201 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+t SapurV1A.0022s0280.3.p 98 QLQTFWANQyqeIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT 184 89******99999************************************************************************** PP NF-YC 85 rtdifdflvdivprdel 101 rtdifdflvdivpr++l SapurV1A.0022s0280.3.p 185 RTDIFDFLVDIVPREDL 201 **************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.86E-33 | 87 | 192 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-21 | 120 | 183 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.1E-37 | 121 | 198 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MKLKNKVYLF TSQPASTCVM DQHGHVQPPA VGMVGSTAPV PYGIPSYQPN QMMGPSATGS 60 LQSPSQPAVF TASSAQLAQH QLAYQHIHQQ QQQQLQQQLQ TFWANQYQEI EQTADFKNHS 120 LPLARIKKIM KADEDVRMIS AEAPVIFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA 180 AAITRTDIFD FLVDIVPRED LKDEVLASVP RGSLPVGGPA DALPYYYMPP QLAPQVSAPE 240 MTVGKPVGDQ ALYSQQSRPY VAQQVWPQQT Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-61 | 106 | 198 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 176 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0022s0280.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215849 | 0.0 | AC215849.1 Populus trichocarpa clone POP023-L07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010746.1 | 1e-160 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Swissprot | Q8L4B2 | 8e-82 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | U5G109 | 1e-152 | U5G109_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s03730.1 | 1e-153 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 6e-82 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0022s0280.3.p |