PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0021s0930.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 202aa    MW: 22754.1 Da    PI: 4.2523
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0021s0930.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-092291948
                            TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                            lG++ W+ Ia++++ gRt++++k+ w+++l
  SapurV1A.0021s0930.2.p  2 LGNR-WSVIASRLP-GRTDNEIKNVWHTHL 29
                            8999.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002492.6E-7129IPR001005SANT/Myb domain
PROSITE profilePS5129415.698133IPR017930Myb domain
SuperFamilySSF466891.22E-8243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-13229IPR009057Homeodomain-like
CDDcd001674.20E-6429No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MLGNRWSVIA SRLPGRTDNE IKNVWHTHLL KRVKQNGESK PEKHIRIPDC HLNDTELSQP  60
EGSTNPTLSG CKSMEYAQMS PQPSSSDRSS ITDTSETNST DLIKVENIDS SEIYPVIDED  120
FWSEPEMVEN SGMPSSSFLD DLQFPFPSSD STTDPAGCYG YGPKVDDNMD FWYNLFIKSG  180
GIEELPVQYL QRYNYVADER I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0021s0930.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029827.11e-124PREDICTED: myb-related protein Myb4-like
TrEMBLB9HKG61e-120B9HKG6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s16660.11e-121(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.17e-19myb domain protein 14