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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0019s0350.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GeBP | ||||||||
Protein Properties | Length: 271aa MW: 29976.2 Da PI: 10.7612 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 40.5 | 7.6e-13 | 119 | 184 | 17 | 97 |
DUF573 17 qGlidfkaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 qG+idf a++g +ps+ ++af++f+k+s++f+v+ +ql +Ki rL+k +k+hdqk f+lsk iWg SapurV1A.0019s0350.1.p 119 QGIIDFIAEKGYDPSKvmAMNAFFDFIKNSLHFDVTMTQLKDKISRLRK-----------------NKPHDQKGFDLSKYIWG 184 9***********7777669****************************86.................25888888888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.1E-8 | 119 | 167 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MAPKRAPAVE DPLSASSRRR RNFQCPPKPE PTIRQSLSES GSESESEPGQ SVKPITSKPK 60 EETPPKEAAA SVAKKSRSKP ALAATPEKST AVKRGNGADR DPKDLKRAKN KNGHDLRWQG 120 IIDFIAEKGY DPSKVMAMNA FFDFIKNSLH FDVTMTQLKD KISRLRKNKP HDQKGFDLSK 180 YIWGSEGSIK ANGKKNTNFN GSKTGNVKKL EALKTGMDVE MERDSSVKKV LKFDRNASVG 240 TMDDYVVRSG LDLAHGMKRK RWRRSGGSCI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0019s0350.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145118 | 2e-62 | EF145118.1 Populus trichocarpa clone WS01120_J07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313912.1 | 1e-101 | GLABROUS1 enhancer-binding protein-like | ||||
TrEMBL | B9HMZ5 | 1e-100 | B9HMZ5_POPTR; GeBP family protein | ||||
STRING | POPTR_0009s09150.1 | 1e-100 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 1e-16 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0019s0350.1.p |