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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
SapurV1A.0018s0610.2.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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| Family |
C3H |
| Protein Properties |
Length: 289aa MW: 30347.5 Da PI: 9.9812 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0018s0610.2.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 20.9 | 6.5e-07 | 37 | 61 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k ++C f+ t C++G++C+F H
SapurV1A.0018s0610.2.p 37 KLKPCTKFFSTAGCPFGESCHFLHH 61
6689********************6 PP
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| 2 | zf-CCCH | 24.3 | 5.4e-08 | 94 | 119 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
k +lC+ + Ck+Gd+C+FaHg+
SapurV1A.0018s0610.2.p 94 KSRLCKKYNSAEGCKFGDKCHFAHGE 119
679*********************96 PP
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| 3 | zf-CCCH | 34.5 | 3.5e-11 | 255 | 279 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+lC++fa+ G C +G rC+FaHg
SapurV1A.0018s0610.2.p 255 YKTKLCDNFAK-GSCTFGQRCHFAHG 279
9**********.*************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.643 | 35 | 63 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.53 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.63E-6 | 36 | 62 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.7E-8 | 37 | 61 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.7E-5 | 37 | 61 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.5E-13 | 90 | 122 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.81E-8 | 91 | 123 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.826 | 92 | 120 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.8E-6 | 94 | 119 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.01 | 94 | 119 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00322 | 3.9E-12 | 161 | 231 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.508 | 162 | 226 | IPR004088 | K Homology domain, type 1 |
| SuperFamily | SSF54791 | 3.21E-14 | 163 | 231 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 1.8E-16 | 163 | 231 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 4.61E-15 | 164 | 227 | No hit | No description |
| Pfam | PF00013 | 5.2E-12 | 164 | 228 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 5.4E-16 | 252 | 285 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.31E-8 | 253 | 284 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.014 | 254 | 281 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 8.1E-7 | 254 | 280 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.3E-8 | 255 | 279 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MMDTRKRGRP DFGTIGNGGL KKSKQEMDSI STGVGSKLKP CTKFFSTAGC PFGESCHFLH 60
HVPGGYKAVA QMVNLGPTVT VPAVPNSSAP SAVKSRLCKK YNSAEGCKFG DKCHFAHGEW 120
ELGKAFVPSH NDPRAAGSVP GRLGGRVEPP PPAPATSFGV YATTTRISVD ASLAGSIIGK 180
GGVHSKQICR QTGTRLSIKE HETNPNLKNI ELEGSLEQIA QASKMIEELV RVTSANAAAK 240
TSGSYGGHAN PGSNYKTKLC DNFAKGSCTF GQRCHFAHGA AELRKSSV*
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