PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0018s0470.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 381aa MW: 40652.9 Da PI: 9.4904 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135.6 | 1.6e-42 | 81 | 156 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dls+ak+y++rhkvC++hsk+p v+v+gl qrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+ SapurV1A.0018s0470.1.p 81 RCQVEGCKVDLSDAKTYYSRHKVCSMHSKSPRVIVAGLVQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRKP 156 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.1E-35 | 73 | 143 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.334 | 79 | 156 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.57E-40 | 80 | 159 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.5E-32 | 82 | 155 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MNTRHLLMEM DSSSLSESAT SNATSPPAES VNGLKFGKKI YFEDHGGVGA PAKRGTGSSS 60 SGSGSGSSRK AQGGQHQQPP RCQVEGCKVD LSDAKTYYSR HKVCSMHSKS PRVIVAGLVQ 120 RFCQQCSRFH LLPEFDQGKR SCRRRLAGHN ERRRKPPSGS VLSTRHGRFS PSLFVAVADN 180 SSRDGGLLVD FSAYPRHTGR DGWPAGRSSG LVTGNETAAT GRSVSHPWQI SSQNPPSNLC 240 MQGSTGGTGL FSAGIPPGEC FTGVAVSDSS CALSLLSNQP WGSTNRASSL AVNDLLSAEE 300 TPVAQSTAHH GAAVNHYANP WSFKNNEGSN SSHDLGQISL PLGSQLPGHL ELSQQNRRQY 360 MDLVHSRAYD SSTQHIHWSL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-30 | 82 | 155 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0018s0470.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322678.3 | 0.0 | squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A2K1XAV4 | 0.0 | A0A2K1XAV4_POPTR; Uncharacterized protein | ||||
STRING | EOY09456 | 1e-157 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4208 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 8e-69 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0018s0470.1.p |