PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0018s0320.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 352aa    MW: 38658.7 Da    PI: 9.3192
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0018s0320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.8e-13279324655
                             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +++Er RR ri +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  SapurV1A.0018s0320.1.p 279 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 324
                             689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.275273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-16276335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-12277326No hitNo description
Gene3DG3DSA:4.10.280.108.9E-15278335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-10279324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-13279329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDSSSHSNYH QQNQPSSGLL RFRSAPSSLL ASFNDNGVDN DSVLNYQEFE DKSAARVREE  60
AVNYSNLPRS YSGLPPHYPR QSSATNASAM DSSYGLTGSI SLGHHEQLKR VDSSLPRQNS  120
SPAGLFGNVS VQNGFPGWNG TNGEASSRLK SQISFSSRAP SSLGFLSPIS ECGSESIEAG  180
SPSADSRIHS NHGFPYGSWN NLHSSENFSS MKRDQENGNL FTNNAQNGDP GNRAHVFSHH  240
LSLPKTSAEM AAMEKLLHLQ DSVPCKIRAK RGCATHPRSI AERVRRTRIS ERMRKLQDLV  300
PNMDKQTNTA DMLDLAVDYI KDLQKQYKTL SDNRANCKCL SKQKPVQNKI V*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0018s0320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033269.10.0PREDICTED: transcription factor bHLH130-like
SwissprotQ66GR31e-101BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A2K1XAW90.0A0A2K1XAW9_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-102bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]