![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0018s0230.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 377aa MW: 41605.9 Da PI: 6.0602 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27 | 8.1e-09 | 192 | 239 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+el+P + +k a +L + +++++ Lq SapurV1A.0018s0230.1.p 192 SHSLAERARREKINQRMKLLQELVPGC----NKISGTALVLDEIINHVQFLQ 239 8*************************9....788889999999999999988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-15 | 186 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.63E-9 | 186 | 243 | No hit | No description |
PROSITE profile | PS50888 | 14.678 | 188 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-14 | 188 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-6 | 192 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-8 | 194 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 377 aa Download sequence Send to blast |
MDLLTGTVAR SGPELDETGL DSLQFDEDIR HLITAPSENA NSFIALLELP ANQAVELLHS 60 DSGKKECPNV TFPSNTSLLE RAARFSVLNG GSNSTDSSSV PSDSSSKNLE KAAPVKSEPL 120 ETESYLDSSQ PLVSDPTVGN SAPNARACSK RKERGKKVKG ASKKRKNEVS KQEEEKLPYV 180 HVRARRGQAT DSHSLAERAR REKINQRMKL LQELVPGCNK ISGTALVLDE IINHVQFLQR 240 QVEILSMKLA VVNPGIDFNL DSIFTTESGS LIDSNFPGMV MPLMWPEAQV NRNRHQFQRQ 300 WQIDALHQPV WGGEEDSHNF IAPENSLLSY DSSANSGTIQ IFFLVPLYFV TPSHCLFSLS 360 LQLWNPLCII VNILNS* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 149 | 165 | KRKERGKKVKGASKKRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0018s0230.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322692.3 | 0.0 | transcription factor bHLH48 | ||||
Swissprot | Q3EAI1 | 8e-88 | BH060_ARATH; Transcription factor bHLH60 | ||||
TrEMBL | A0A2K1XAZ2 | 0.0 | A0A2K1XAZ2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s05600.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4985 | 29 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57800.2 | 5e-94 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0018s0230.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|