PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0018s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 362aa    MW: 41229.9 Da    PI: 6.8136
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0018s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001284306123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             + C +Cgk F  + + ++H +++
  SapurV1A.0018s0090.1.p 284 FMCRKCGKAFAVRGDWRTHEKNC 306
                             89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64200227IPR007087Zinc finger, C2H2
SMARTSM003550.58200222IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-6200219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
SMARTSM00355280246279IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.75E-6266304No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5280304IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549284304IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808284304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MADPYSNFFT GWVKFNSNPL HHYPSPPQQL PYTHNFYTSS TLPASHSQPY FHYYQNPPRS  60
PPLKEALPLL RLSPTRNGKE QDHRQQDDDD DEEEEEEETQ ELSCRAVDVD KIKYRAKDQE  120
RFFSSCSANN KEDEESVSVA LHIGLPSPSA AEMATVLSSS SEITDKDGDG DDSVYPISRL  180
NKGQYWIPTP SQILIGPTQF SCPVCCKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTG  240
MLRLPCFCCA PGCKNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR  300
THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGSGHAAYGI DGFEEEDEPS SEVEQDNESM  360
Q*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0018s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323306.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-146ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLB9II500.0B9II50_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-132C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]