PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0018s0030.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 688aa    MW: 77328.5 Da    PI: 5.3748
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0018s0030.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-09626679147
                             TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT....TTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg....kgRtlkqcksrwqky 47 
                             + +WT+ E+e+l+++v+++ ++    Wk I ++      +gRt+ ++k++w+++
  SapurV1A.0018s0030.2.p 626 KVPWTAHEEEILKEGVQKFASDgkyPWKDILEYGSsvfaNGRTAIDLKDKWRNL 679
                             579******************************99*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.1E-7338398IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.99E-8338399IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.538349398IPR019787Zinc finger, PHD-finger
SMARTSM002493.1E-6351396IPR001965Zinc finger, PHD-type
PROSITE patternPS013590352395IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5129410.313621684IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-12621684IPR009057Homeodomain-like
SuperFamilySSF466892.09E-11623681IPR009057Homeodomain-like
SMARTSM007171.6E-6625682IPR001005SANT/Myb domain
PfamPF002496.2E-6626679IPR001005SANT/Myb domain
CDDcd116606.62E-15627681No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MHKRACMPKC ALEKVKDAIL EGFHPYASLK EYSELVNAND RGNRITTDYG DDGAPVGRVD  60
GSDTDGQMKP PDESPIHLLL ENENAGEDNS HYRNSLHSER ERSGSASQNL AGDHEDQGCV  120
DHLQPQAKRF KEDALHDNLS VGQISTTPPQ HKDLLEDSFE MVVEDSENRD FHLAKESSQG  180
GLEGSRPVEN DHDEDVGIGR HGCSLDADNE FQHNQHEIAH NANIMPLSGD GLHQYSFVDE  240
INHAEPRKSN AAPSSGTSDK LFINGSKDNF DHSGRPKPSN SVSSNGFHRN TDADEREAGT  300
NLLYEEDESN ESDEYDHERV DVGLKKSQFL SSQYMSRHDS LAEVNWTDQN LCVKCGKDGQ  360
LLVCGAGSCS LVTHENCLVF SPHFDERGDF YCPFCAYSLA ISEYLEAKKK AYSARKELKL  420
FIETRQEYQS NKHAQRLHSK RHGSSRQNED EDLLNKFLDY ENLAGTKRIQ SNSRGQISEG  480
NDHQFQKGKR KKQGEPFASC IGFDSLCREE EPDVNVRTNH LSTVEKEGEE VVRENSSGTE  540
LDINQHQVSV DPNYCDGNQL CKEKENVSGS QRIDGRRRKA VCAISSDGGD ISGDEDDKSI  600
TTNYFIRFRK RERQYTPAMP QSRRKKVPWT AHEEEILKEG VQKFASDGKY PWKDILEYGS  660
SVFANGRTAI DLKDKWRNLC KSSPKSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1608625RKRERQYTPAMPQSRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0018s0030.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443805.10.0uncharacterized protein LOC7484006 isoform X1
TrEMBLA0A3N7G2F60.0A0A3N7G2F6_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05370.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-08MYB_related family protein