PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0017s0390.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 241aa    MW: 26696.9 Da    PI: 8.1262
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0017s0390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.8e-183681147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            +g+W++eEd +l ++v+++G+++W++I+r++  gR++k+c++rw + 
  SapurV1A.0017s0390.1.p 36 KGPWSAEEDRILTRLVERHGPRNWSLISRCIT-GRSGKSCRLRWCNQ 81
                            79*****************************9.***********985 PP
2Myb_DNA-binding53.36.3e-1790132347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  SapurV1A.0017s0390.1.p  90 PFSPAEDETILVAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 132
                             79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.2263182IPR017930Myb domain
SuperFamilySSF466891.83E-3134129IPR009057Homeodomain-like
SMARTSM007172.5E-163584IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-243789IPR009057Homeodomain-like
CDDcd001673.60E-153880No hitNo description
PfamPF139211.3E-173997No hitNo description
PROSITE profilePS5129423.84983137IPR017930Myb domain
SMARTSM007171.5E-1487135IPR001005SANT/Myb domain
CDDcd001671.50E-1190133No hitNo description
Gene3DG3DSA:1.10.10.605.3E-2390136IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
METMNMCSTS SDSSSSESSF NGNKTLRGTD KSAKIKGPWS AEEDRILTRL VERHGPRNWS  60
LISRCITGRS GKSCRLRWCN QLSPNVEHRP FSPAEDETIL VAHARYGNRW ATIARLLPGR  120
TDNAVKNHWN STLKRKARQR QSQSQMNLEG NFDSNYGNNN ECIDINMTSG SMADGMVREE  180
EDALTALTLA PPGNGGAVCG NNGGMVVERM AESLPAGFWD VMRDVIAREV REYVSSTLYM  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-39351373105MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-393513757159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-393513757159MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-39351373105C-Myb DNA-Binding Domain
1msf_C1e-39351373105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138LKRKARQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0017s0390.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301201.11e-148transcription factor MYB73
SwissprotO231606e-58MYB73_ARATH; Transcription factor MYB73
TrEMBLB9GNY71e-147B9GNY7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s13030.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-60myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]