PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0016s0320.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 347aa    MW: 38683.2 Da    PI: 4.7416
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0016s0320.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-08289344147
                             TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                             r++WT+ E++ l+++v+++ ++      W++I +        +Rt+ ++k++w++ 
  SapurV1A.0016s0320.3.p 289 RLNWTAVEEDTLKEGVEKFAKPgnnntPWRKILEFGHsvfdSTRTPTDLKDKWRNM 344
                             89*******************************988899***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.7284346IPR017930Myb domain
SuperFamilySSF466897.8E-9288345IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-9289346IPR009057Homeodomain-like
PfamPF002491.0E-5289344IPR001005SANT/Myb domain
CDDcd116606.27E-14292346No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MLAKKALLGF IDSEMVGGEA SGGEEKRDGG ERVEFDGSEN RDTPVEDGGD GLRVSDCDRC  60
EVMVDDEMDG ALPGAVDGSD NGHNSQEEKT QGIESLEDSI SNEIRDGRNI SETHVFENLE  120
GEEGARELEE NDNILKGGER AESSRTHYVE KEQEHLQQDG CNDKEQEQIQ QDGCDDKEQG  180
QCVGEEQVHR DAREANSGGG VTAPKVPHFS DSGTGKSVVR RVKRLGKKKT ARSQYAKLPE  240
EEPPQPHTID KQEAKPPKKK VSLSKEPRRR LESPNISSNL YPRNEKRQRL NWTAVEEDTL  300
KEGVEKFAKP GNNNTPWRKI LEFGHSVFDS TRTPTDLKDK WRNMTK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0016s0320.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011034802.10.0PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1
RefseqXP_011034803.10.0PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1
RefseqXP_011034805.10.0PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1
TrEMBLA0A3N7EG690.0A0A3N7EG69_POPTR; Uncharacterized protein
STRINGPOPTR_0002s00710.10.0(Populus trichocarpa)