PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0016s0320.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 476aa    MW: 53108.4 Da    PI: 4.9789
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0016s0320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.6e-08418473147
                             TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                             r++WT+ E++ l+++v+++ ++      W++I +        +Rt+ ++k++w++ 
  SapurV1A.0016s0320.1.p 418 RLNWTAVEEDTLKEGVEKFAKPgnnntPWRKILEFGHsvfdSTRTPTDLKDKWRNM 473
                             89*******************************988899***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.44E-760119IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.4E-661124IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS512949.7413475IPR017930Myb domain
SuperFamilySSF466891.39E-8417474IPR009057Homeodomain-like
PfamPF002491.6E-5418473IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-8418475IPR009057Homeodomain-like
CDDcd116606.77E-14421475No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MRSKYSGSQR RFSKSPQQPP SSSSLRPFPQ LNLEEANSDE DDANLTEKSG RSDDDVGNSG  60
DWMEVDACLS CNKRGKSKLL VCCVIGCPVS IHEKCSNFKL AFDDLGRFCC PYCSYKREVS  120
RAKELFQKAM LAKKALLGFI DSEMVGGEAS GGEEKRDGGE RVEFDGSENR DTPVEDGGDG  180
LRVSDCDRCE VMVDDEMDGA LPGAVDGSDN GHNSQEEKTQ GIESLEDSIS NEIRDGRNIS  240
ETHVFENLEG EEGARELEEN DNILKGGERA ESSRTHYVEK EQEHLQQDGC NDKEQEQIQQ  300
DGCDDKEQGQ CVGEEQVHRD AREANSGGGV TAPKVPHFSD SGTGKSVVRR VKRLGKKKTA  360
RSQYAKLPEE EPPQPHTIDK QEAKPPKKKV SLSKEPRRRL ESPNISSNLY PRNEKRQRLN  420
WTAVEEDTLK EGVEKFAKPG NNNTPWRKIL EFGHSVFDST RTPTDLKDKW RNMTK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0016s0320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011034802.10.0PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1
RefseqXP_011034803.10.0PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1
RefseqXP_011034805.10.0PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1
TrEMBLA0A3N7EG690.0A0A3N7EG69_POPTR; Uncharacterized protein
STRINGPOPTR_0002s00710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022