PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0016s0070.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 967aa MW: 107411 Da PI: 8.041 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.3 | 6.8e-41 | 120 | 197 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dl++ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ SapurV1A.0016s0070.5.p 120 MCQVDNCKEDLTKAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 197 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.8E-34 | 115 | 182 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.966 | 118 | 195 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-37 | 119 | 199 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-29 | 121 | 194 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 967 aa Download sequence Send to blast |
MTSMAKKHDL SYQTPNSQLL PQFLQTSRGK NWNPKAWDWD SVGFVAKPSV AAETLRLGTV 60 SREPKKKDEN DSKNKSNSAN EDDDGLGLNL GGSLTSVEEP VSRTNKRVRS GSPGNGSYPM 120 CQVDNCKEDL TKAKDYHRRH KVCEVHSKAT KALVGKQMQR FCQQCSRFHP LSEFDEGKRS 180 CRRRLAGHNR RRRKTQPEDV TSQLLLPGSR DMNNNGNLDI VNLLTALAHS QASAPDAQAI 240 LSQRSSHSSD SEKSKLTGPN QVTGPHLQKR SNVEFPSVGS ERLSRCYESP VEDSDCQIQE 300 SHPNLPLQLF SSSPENESRQ KPASSMKYFS SDSSNPIEDR SPSSSPPVVQ KLFPLQSTAE 360 TMKSEKMPVR REVNANVEGG RSHGGALPLE LFRGLNREPD HGSFQSFPYQ GGYTSSSGSD 420 HSPSSQNSDS QDRTGRIIFK LFDKDPSHFP GTLRTKIYNW LSNSPSEMES YIRPGCVVLS 480 VYLSMPSPSW EQLERNLLQL VDSLVQDSDS DLWRSGRFLL NTGRQLASQK DGRVRLCKSW 540 RTWSSPELIL VSPVAVIGGQ ETSLQLKGRN LTGPGTKIHC TYMGGYTSKE VTDSSSPGSM 600 YDEINVGGFK IHGPSPSILG RCFIEVENGF KGNSFPVIIA DASICKELRL LESEFDEKAE 660 ASNIVSEEQA HDLGRPRSRE EALHFLNELG WLFQRKSVPS MLEAPDYSLN RFKFLLIFSV 720 ERDYCVLVKT ILDMLVERNM CRDELSKESL EMLHEIQLLN RSVKRRCREM ADLLIHYSII 780 GLDNSSRTYI FPPNVGGPGG ITPLHLAACA SGSDGLVDAL TNDPQEIGLS CWNSVLDANG 840 QSPYAYAFMT KNHSCNLLVA RKLSDKRNGQ ISVAIGNEIE QVAMEQEQRT MSQFQRESKS 900 CAKCASVAAK FHGRFPGSRG LLQRPYIHSM LAIAAVCVCV CLFFRGAPDI GLVAPFKWEN 960 LDYGTI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-32 | 111 | 194 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00664 | PBM | Transfer from Potri.002G002400 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0016s0070.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024450223.1 | 0.0 | squamosa promoter-binding-like protein 14 isoform X2 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A2K2BB76 | 0.0 | A0A2K2BB76_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s00440.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0016s0070.5.p |
Publications ? help Back to Top | |||
---|---|---|---|
|