PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0015s0850.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 427aa    MW: 47640.4 Da    PI: 8.1501
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0015s0850.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.64.9e-065880123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C++C++ F r  nL+ H r+H
  SapurV1A.0015s0850.1.p 58 YVCEICNQGFQRDQNLQMHRRRH 80
                            9*********************9 PP
2zf-C2H215.35.9e-05136157223
                             EETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                              C++C+k +  +s++k H++t+
  SapurV1A.0015s0850.1.p 136 ICEKCSKGYAVQSDYKAHLKTC 157
                             7*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.09E-55780No hitNo description
Gene3DG3DSA:3.30.160.601.7E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.975880IPR007087Zinc finger, C2H2
SMARTSM003550.00525880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035513099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.8E-4126156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.09E-5130155No hitNo description
SMARTSM0035566135162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MLDNTTTSTA PSPSSDPFTT SLDNGVTNKR KRKPAGTPDP DAEVVSLSPR TLLESDRYVC  60
EICNQGFQRD QNLQMHRRRH KVPWKLLKRE TQEVKKRVYV CPEPSCLHQE PCHALGDLVG  120
IKKHFRRKHS NHKQWICEKC SKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ  180
DACTVRRAQP ELQAFQPACS SRTASSTSPS SDATFNIAPL PGIQMSKPTE PVYFCSDRND  240
ASTSTQQKEH NLELQLLPST SNDHLPQNPD KPRAANLKLS IGSSDHSCEK DRPHKATGDP  300
SWHKSTSNEP ALEAEKLNEF ANEQLRLAMT EKAYAEEARQ QAKRQIEMAE LEFANAKRIR  360
QQAQAELEKA HLLKEQATKK ISSTIMQVTC QVCKQQFQAS TASAPADETS LAMSYMSSAT  420
TEGDGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-18133183555Zinc finger protein JACKDAW
5b3h_F9e-18133183555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0015s0850.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470670.0EF147067.1 Populus trichocarpa clone WS01227_A11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461730.10.0protein SHOOT GRAVITROPISM 5
SwissprotQ9C9X71e-153IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A2K1ZH050.0A0A2K1ZH05_POPTR; Uncharacterized protein
STRINGPOPTR_0008s13980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-151indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]