PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0015s0620.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 403aa    MW: 45985.5 Da    PI: 4.7988
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0015s0620.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.7e-35121042103
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Flkk ye+++de+++++isws++++sfv++d +ef+ ++LpkyFkhsn +SFvRQLn+YgF+k+++++         weF+++ F +
  SapurV1A.0015s0620.1.p  12 FLKKCYEMVDDESTNSIISWSQTNDSFVIWDLTEFSVHLLPKYFKHSNSSSFVRQLNIYGFRKIDTDH---------WEFAKDGFIR 89 
                             9*****************************************************************99.........********** PP

                             XXXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkkse 103
                             g+k+ll++i r+k++
  SapurV1A.0015s0620.1.p  90 GQKHLLKNISRRKNS 104
                             ************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-358101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.44E-338101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-528101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-181235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-2912101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-185062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MVKSSDSGVA PFLKKCYEMV DDESTNSIIS WSQTNDSFVI WDLTEFSVHL LPKYFKHSNS  60
SSFVRQLNIY GFRKIDTDHW EFAKDGFIRG QKHLLKNISR RKNSQGTDNR KSVQQQDNSI  120
EHHETFENVG IWKEVESLKT GKIALAQELV KLRQHQETAD NKLLLLRDQL QGMEKNQQQM  180
LSFLVMAMQK SPGFLAQLLH KKENNWRMAE PGSIVEQVAD DAEPLASEGM IVRYQPPVDE  240
TFEPIHAPPI GPENPRESNP SSDGVKDFFF SPDFMELLMD ENLGFDNHAP FVLPELADDG  300
AWEQLLLANP FVANIKDSKK DYEEATDAET DTETAVPGTQ LNRSQDFENL IEQMEKSYNL  360
ENQATGEGPH FEKPRNLEIL TKQMGLLASE TNHKHTVQWK TT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-23410412123Heat shock factor protein 1
5d5u_B4e-23410121129Heat shock factor protein 1
5d5v_B4e-23410121129Heat shock factor protein 1
5d5v_D4e-23410121129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0015s0620.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140020.0KP014002.1 UNVERIFIED: Populus simonii heat shock transcription factor A8b-like (HsfA8b) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311537.10.0heat stress transcription factor A-8 isoform X1
RefseqXP_024463668.10.0heat stress transcription factor A-8 isoform X1
RefseqXP_024463669.10.0heat stress transcription factor A-8 isoform X1
SwissprotQ9S7U51e-108HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLB9HJI40.0B9HJI4_POPTR; Uncharacterized protein
STRINGPOPTR_0008s13620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-108heat shock transcription factor A8