PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0013s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 282aa    MW: 32029.5 Da    PI: 10.2013
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0013s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.3e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl
  SapurV1A.0013s0160.1.p 14 RGPWTPREDTLLTKYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
                            89******************************99************97 PP
2Myb_DNA-binding52.31.3e-1667112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+ T++Ed+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l
  SapurV1A.0013s0160.1.p  67 RGNITPDEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                             7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.392961IPR017930Myb domain
SuperFamilySSF466895.87E-3011108IPR009057Homeodomain-like
SMARTSM007171.6E-121363IPR001005SANT/Myb domain
PfamPF002493.2E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-241568IPR009057Homeodomain-like
CDDcd001678.60E-101661No hitNo description
PROSITE profilePS5129425.66362116IPR017930Myb domain
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002495.4E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2569116IPR009057Homeodomain-like
CDDcd001674.36E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTPR EDTLLTKYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR MHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLVKRLRSQG  120
TDPNTHKKLP EPVKREVKRR RSDKNTSKKK QNKSKAKLVP DEKHKVHLPK PVRFASSSLP  180
RKDSFEISTV PISPGQGTDR GRFGTEAWHN FKDIDTGAGA SFLDGDVHRY DLANGSNLEC  240
QSLVPTTNTL EKLYEECLQL LEIDDHQDKV ILDSFADSLL V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0013s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038509.11e-169PREDICTED: myb-related protein 308-like
TrEMBLB9I9001e-163B9I900_POPTR; Uncharacterized protein
STRINGPOPTR_0014s09630.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.16e-69myb domain protein 3