PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0012s0660.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HB-other
Protein Properties Length: 1725aa    MW: 195044 Da    PI: 6.14
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0012s0660.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-182783257
                            T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                             kR+  t+ qle+Le++++  + yps+e+r+eL++klgL++rq ++WF+ rR k+kk
  SapurV1A.0012s0660.3.p 27 PKRQMKTPFQLETLEKAYAAaETYPSEEMRAELSEKLGLSDRQLQMWFCHRRLKDKK 83
                            69*****************99**********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-17884IPR009057Homeodomain-like
SuperFamilySSF466892.57E-151584IPR009057Homeodomain-like
PROSITE profilePS5007116.8112384IPR001356Homeobox domain
SMARTSM003891.2E-162588IPR001356Homeobox domain
PfamPF000462.2E-162783IPR001356Homeobox domain
CDDcd000861.06E-122884No hitNo description
PROSITE profilePS5082716.662515574IPR018501DDT domain
SMARTSM005714.3E-22515574IPR018501DDT domain
PfamPF027916.7E-18516571IPR018501DDT domain
PfamPF050664.5E-16697765IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156126.9E-7904947IPR028942WHIM1 domain
PfamPF156131.8E-1310861158IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1725 aa     Download sequence    Send to blast
MEANSDEEDH NRSKSNVMSS NEGQSKPKRQ MKTPFQLETL EKAYAAAETY PSEEMRAELS  60
EKLGLSDRQL QMWFCHRRLK DKKETPVKKQ RNAAPLPESP LEEMRVAGAE NGSDYGSGSG  120
SGSSPLSESR KVVLDDGHMM RRYYDSSPQS VMELRAIACV EAQLGEPLRE DGPILGMDFD  180
HLPPDAFGTP IASISEQQKR MGYSYEDKIY ERHDAKSSKD HASIRSDAYG LAQSPYHDSP  240
ADTLRGRASP FGAGQMPRAR LLSQQDKRGH IFSSPQRDDD FIPQRDTFAN NRTSAQSITH  300
PIMGPENPNV FSDAQTFHHD TELRLERKRK IEEPRTIRDV EAYESRMRKE LEKQDILRRK  360
NEERMRKEME RHDRERRKEE ERLMRERQRE EERTLREQKR EHERREKFMQ KEYLRAEKRR  420
QKEELRREKE AVKRKAAMEK ATARKIAKDS LDLIEDEQLE LMELAAASKG LASIVNLNYD  480
TLQNLDSFRD LLITFPSKSV QLKKPFGFQP WLDSEENIGN LLMVWRFFIT FADVLGLWPF  540
TLDEFVQAFH DYDSRLLSEL HIALLKLIIK DIEDVARTPS SGLGINQYYT ANPEGGHPQI  600
VRGAYTWGFD IRNWQQHLNP LTWPEILRQL ALSAGFGPQL RKRNATWTGL GDIDEVKDCE  660
DIISTIRNGS AAENAFALMR EKGLLLPRRS RHRLTPGTVK FAAFHVLSLE GSKGLTVLEL  720
ADKIQKSGLR DLTTSKTPEA SISVALTRDQ KLFERIAPST YCLRAAFRKD PADAEAILAA  780
ARKKIRIFEN GFLGGEVVDD VERDEDSEGD EDPEVDDLTT PLSANKSFVH SSKLNTLPVS  840
GKYKVGNDVS LTVQNESEKG LSTFSLNGPK DVMAPIIIEQ CVTHKDEGTN NGNGRDIEID  900
ETKSGESWIQ GLTEGEYSHL TVEERLNALV VLVGIANEGN SIRAVLEDRL EAANALKKQM  960
WAEAQLDRSR LKEEFVSKLD FPSLTVGRVE TQFASSAVEG SQSPLVLADS KNKEASPSNA  1020
EDRKPLAENV ENHLSIVLSE KALVVQDLSM NPDNISMQQH GYASKRSRSQ LKAYVTHLAE  1080
EMYIYRSLPL GQDRRRNRYW QFVASASRND PCSGRIFVEL HDSNWRVIDS EEAFDTLLSS  1140
LDTRGVRESH LRIMLQKIES SFKENLQRNL WSPSIVCQSG TTDDKKAEKD NGNCAASIDG  1200
PSSMLRVSSS DSFDTFSSFR IELGRTSAEK KGALKRYQDF QNWMWKDCFN SSTLCSMKYG  1260
KKRCEQLLDT CNLCFSSYLS EDTHCLSCHQ AFKVDNKNFD FAEHEIQCKE KSFDPGNARA  1320
CDSCLPLGVR LLTALLGSIE VSVPQEALES FWMEIRRKDW GVKLIKSSST EELLQRLTVF  1380
ESAIKRQRLS SNFETTKELL GSSVSSGSAA HDSASLGSVS LLPWIPKTSA AMALRLFELD  1440
ASIIYVKNEK PEPSTDKSVK VYMKLPSRYS DFKNEVEIKD VKLEEHNKEI VDLRGKRSNY  1500
KRGRGGRDQG LATKWQRRVP GLKSDTRRQS SSRGVQNLNQ GSRQQGRKTN LQASSRGRRT  1560
VRKRRVEKMV AKEPLPGRMT NKVAAPMSYL SKKTAVHNSY VKSFRNLDDE DWSAKRGRMN  1620
AVGDDNSNSM EEAESDDNVE EEVSGQGNWE PRFNGTPNGW NGNSMEVSDD DGDASNGDAS  1680
NGVAAMGDDD SEGDVEMSDR SDREANQVQN DEGLDFADSD EYSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17683RRLKDKKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0012s0660.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027775.10.0PREDICTED: uncharacterized protein LOC105127984 isoform X2
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A2K1YG450.0A0A2K1YG45_POPTR; Uncharacterized protein
STRINGPOPTR_0004s04840.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1