PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0012s0360.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 185aa    MW: 21157.9 Da    PI: 9.4315
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0012s0360.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.5e-111361655
                            HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                            + +E++RR++++  +++L +l+P  +   + + ls  + L +A  YIk Lq
  SapurV1A.0012s0360.1.p 13 KLMEKNRRNQMKALYSQLNSLVPReS--SREPALSVPDQLDEAASYIKRLQ 61
                            689*********************55..46666*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.312760IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-111276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-41265No hitNo description
SMARTSM003531.3E-51366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-81361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-111382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEQNLSSSTT DRKLMEKNRR NQMKALYSQL NSLVPRESSR EPALSVPDQL DEAASYIKRL  60
QASLEKMKEK RDRLMGMERA NYIRKNSSRG TITGSRSPRI EVREMGSTLE VVLMNGSDNL  120
FMFNEIIRAL HEEGAEINNA SLSAVEDNVF HTVHSKVRDS AHSMNTAARI YQRLKMFVED  180
DREF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0012s0360.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305793.21e-100transcription factor bHLH162
TrEMBLA0A2K2APU41e-98A0A2K2APU4_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05320.14e-88(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-43bHLH family protein