PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0011s0520.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 372aa    MW: 42074 Da    PI: 6.3477
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0011s0520.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.8e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  SapurV1A.0011s0520.1.p 14 KGLWSPEEDEKLLNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                            678*******************************************97 PP
2Myb_DNA-binding48.91.5e-1567112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++yl
  SapurV1A.0011s0520.1.p  67 RGMFSQQEEDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNSYL 112
                             788*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-25664IPR009057Homeodomain-like
PROSITE profilePS5129418.343961IPR017930Myb domain
SuperFamilySSF466893.59E-2912108IPR009057Homeodomain-like
SMARTSM007172.3E-121363IPR001005SANT/Myb domain
PfamPF002497.2E-151461IPR001005SANT/Myb domain
CDDcd001674.65E-111761No hitNo description
PROSITE profilePS5129425.11162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2565116IPR009057Homeodomain-like
SMARTSM007171.9E-1466114IPR001005SANT/Myb domain
PfamPF002491.0E-1467112IPR001005SANT/Myb domain
CDDcd001675.13E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDEKLLNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS YLKKKLMKQG  120
IDPTTHKPLC QVEVKEQKVC TEKASFQIQQ SKGLPIVSSF TAQEPAFLIN DTAYNISGLQ  180
EVSREQFLNK QSYDPLSYFE FPAGIDPTGY NSSLSSVYYP TVRSLDQNHF ETSSNFGFTS  240
MPSLTSFDHG SMSGTDFSDN SASRMSSMFL NEAKESSSNS SNISNCAGYQ MNNMMENAAA  300
FSSWESDDHK FEPVFQYHQV NGIKTEELNP SPWQEAGRLH THQNSVDFNS YPLTSLSEDI  360
TGANFDVFHQ I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0011s0520.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707850.0AB970785.1 Populus tremula x Populus tremuloides PtxtMYB148 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321627.10.0transcription factor MYB35
TrEMBLB9IEX50.0B9IEX5_POPTR; MYB family protein
STRINGPOPTR_0015s09430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.16e-84myb domain protein 86