PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0011s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 251aa    MW: 28850.4 Da    PI: 8.4506
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0011s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.5e-162368550
                            SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                  SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                            +k+ r  +fskR+ ++ KKAeEL +LC++ ++++ f+++g++ +y+
  SapurV1A.0011s0140.1.p 23 DKITRAMSFSKRQPTLKKKAEELKTLCAVTICMVCFGPDGTVETYP 68
                            6899*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-4970IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-142388IPR002100Transcription factor, MADS-box
PfamPF003193.9E-142367IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.6192371IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAEKSQRTAS RREKFMKKIN EGDKITRAMS FSKRQPTLKK KAEELKTLCA VTICMVCFGP  60
DGTVETYPEN AEEVKKEIRF FKGLHAMQKR EFNLLGYLEN VKGKFELKRQ KVRRRKIEAL  120
TESFSDQIEG LSGGDLLCFI EILEKKLMGL REKINLLSNI HGEKGKAIAH DSDTMDRACD  180
YTVPEPIEAK NNIAMVENKS AGSIVYEDLA EYFRDSELLK LAEFEYQPII PEMKPGLDQW  240
KQLQVNPQFW *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0011s0140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321604.31e-119agamous-like MADS-box protein AGL103
TrEMBLA0A2K1XJN61e-118A0A2K1XJN6_POPTR; Uncharacterized protein
STRINGPOPTR_0015s08890.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1616059
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.13e-08AGAMOUS-like 103