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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
SapurV1A.0009s1100.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
| Family |
SRS |
| Protein Properties |
Length: 289aa MW: 31004.3 Da PI: 8.8211 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0009s1100.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 179.8 | 1.2e-55 | 81 | 242 | 6 | 154 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalss 88
+C+dCGn+akk+C+++RCRtCCks g++C+th+kstWvpaa+rrer + ++++ kr+r++ +++s++ s
SapurV1A.0009s1100.2.p 81 RACRDCGNRAKKECQYRRCRTCCKSGGYECTTHLKSTWVPAARRRERLGYSSGGGGGGSSASssggGCIGGKRPRDN-VNATSKSFS 166
57*********************************************877766544433333345633445566655.222222222 PP
DUF702 89 tklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
t+ ++a ++ +l+t s lP +v+++avfrcvrv++++ g +e+aY++ v+i+GhvfkG+LydqG++e
SapurV1A.0009s1100.2.p 167 TSNNNAAASLNLDTGSsyqdgsfkqsLPVQVRAPAVFRCVRVTAINGGGAEVAYEAKVNISGHVFKGFLYDQGINE 242
33333333333333334555555557***********************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MLGLHNILFI APPPSSCNHQ QPPQAPSTHR ITDTNDQYGI ADNQESWTTL KKYPQESSFL 60
ERRALNAVED CDTAINIGPA RACRDCGNRA KKECQYRRCR TCCKSGGYEC TTHLKSTWVP 120
AARRRERLGY SSGGGGGGSS ASSSGGGCIG GKRPRDNVNA TSKSFSTSNN NAAASLNLDT 180
GSSYQDGSFK QSLPVQVRAP AVFRCVRVTA INGGGAEVAY EAKVNISGHV FKGFLYDQGI 240
NEKKLFPCNS KRDSSERNRD SSSPVVDPSE AYTATGNQRL LEGTNCTT*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 2e-42 | Lateral root primordium (LRP) protein-related |
