PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0009s0880.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 353aa    MW: 39128.6 Da    PI: 9.0041
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0009s0880.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.62.1e-1574161186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                             +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ + +++ ++rs+k   qCk++++ ++kryk +k+   ++  +  s +p+fd
  SapurV1A.0009s0880.1.p  74 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVsSREDYSRSSKtdiQCKNRIDTVKKRYKLEKAKVDSG--GGPSGWPFFD 158
                             7*************************************878889997754449*******************997..56667***** PP

                trihelix  84 qle 86 
                              l+
  SapurV1A.0009s0880.1.p 159 PLD 161
                             987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-2572163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDDDEIQSPS NTTEHSSPSP SPPTPTGRIA VSAPAASSPA LPPPSPPQQN NCLALVLPTQ  60
SKANGGGGGG REDCWSEGAT AVLIDAWGER YLELSRGNLK QKHWKEVAEI VSSREDYSRS  120
SKTDIQCKNR IDTVKKRYKL EKAKVDSGGG PSGWPFFDPL DKLIGSTARI TVVGNGYVGS  180
KIPTRVRSAS RRVGVNQYHF RNQNVKTRIR KQEEDEEEEE DGAESDDSFP PMKKRKVVVE  240
RGVGKEKRGG WGNSIRMLTQ AMVKFGEAYE QAESAKLQQV VEMEKTRMEF VKELELQRMQ  300
FFMQTQMEIS QLKKARKGGN ASSNHYHHEY HRHHTGNNIN ASNTVNNSDS DG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0009s0880.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020370.11e-158PREDICTED: trihelix transcription factor ASIL2 isoform X2
SwissprotQ9LJG86e-86ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2K2B9V51e-152A0A2K2B9V5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s19840.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-75sequence-specific DNA binding transcription factors